View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13017_low_5 (Length: 428)
Name: NF13017_low_5
Description: NF13017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13017_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 411
Target Start/End: Complemental strand, 2972583 - 2972179
Alignment:
| Q |
10 |
aagaaaatcatatctaacttgattatgatgtactttgctttgtaaatttcatcgcataatcatgtataagatcgtatcttgactatcaagacgttactat |
109 |
Q |
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| T |
2972583 |
aagaaaatcatatctaacttgattgtgatgtactttgctttgtaaatttcatcgcataatcatgtataagatcgtatcttgactatcaagacgttactat |
2972484 |
T |
|
| Q |
110 |
cttgactatcaagatgttatcagtaacggtaatctggcaatctctcaacatnnnnnnntgttatgtcgcgacccagattgcagctgcagacctttattta |
209 |
Q |
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| T |
2972483 |
cttgactatcaagttgttatcagtaacggtaatctgggaatctctcaacataaaaaaatgttatgtcgcgacccagattgcggctgcagacctttattta |
2972384 |
T |
|
| Q |
210 |
aaaccctagtctccatcaaacataaaaatttaacaagttgcatttaacaagttaagatatcaattgctc---nnnnnnnngttaagatatcaaattatcc |
306 |
Q |
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| T |
2972383 |
aaaccctagtctccatcaaacatacaaatttaactagttgcatttaacaagttaagatatcaattgctcaaaaaaaaaaagttaagatatcaaattatcc |
2972284 |
T |
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| Q |
307 |
attgactaactaaagactaattgttggtgacaaatattgtactcttttacctgcagacagatacacagaaacatgacgaaattcatggacaggatccctt |
406 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2972283 |
attgactaactaaagactaattgttggtgacataaattgtactcttttaactgcagacagatccacagaaacatgacgaaattcatggacaggatccctt |
2972184 |
T |
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| Q |
407 |
gtggt |
411 |
Q |
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||||| |
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| T |
2972183 |
gtggt |
2972179 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 25160233 - 25160265
Alignment:
| Q |
96 |
caagacgttactatcttgactatcaagatgtta |
128 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
25160233 |
caagtcgttactatcttgactatcaagatgtta |
25160265 |
T |
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