View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13017_low_6 (Length: 393)

Name: NF13017_low_6
Description: NF13017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13017_low_6
NF13017_low_6
[»] chr5 (13 HSPs)
chr5 (15-139)||(29568361-29568485)
chr5 (15-139)||(29168239-29168363)
chr5 (15-138)||(1758133-1758256)
chr5 (15-138)||(29425281-29425404)
chr5 (31-138)||(29569708-29569815)
chr5 (31-139)||(27918634-27918742)
chr5 (216-286)||(29568559-29568629)
chr5 (216-284)||(1757999-1758067)
chr5 (216-286)||(29569867-29569937)
chr5 (240-286)||(29166883-29166929)
chr5 (243-284)||(29425195-29425236)
chr5 (254-286)||(27918541-27918573)
chr5 (344-374)||(29568681-29568711)
[»] chr4 (8 HSPs)
chr4 (10-138)||(27521322-27521450)
chr4 (15-138)||(18986085-18986208)
chr4 (15-133)||(27461990-27462108)
chr4 (15-133)||(27482129-27482247)
chr4 (216-284)||(27461851-27461919)
chr4 (216-284)||(27481990-27482058)
chr4 (216-284)||(27521516-27521584)
chr4 (216-284)||(18985951-18986019)
[»] chr3 (2 HSPs)
chr3 (31-139)||(25518468-25518576)
chr3 (216-273)||(25518343-25518400)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 29568361 - 29568485
Alignment:
Q  15 cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568361 cagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 29568460  T
Q  115 cttggatgatagttggtgagcagaa 139  Q
    |||||||||||||||||||||||||    
T  29568461 cttggatgatagttggtgagcagaa 29568485  T

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Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 29168363 - 29168239
Alignment:
Q  15 cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 114  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  29168363 cagagacacagcagctaagagcattcccacggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgctt 29168264  T
Q  115 cttggatgatagttggtgagcagaa 139  Q
     ||||||||||||||||||||||||    
T  29168263 attggatgatagttggtgagcagaa 29168239  T

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Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 1758256 - 1758133
Alignment:
Q  15 cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 114  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1758256 cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgctt 1758157  T
Q  115 cttggatgatagttggtgagcaga 138  Q
    ||||  |||| |||||||||||||    
T  1758156 cttgagtgatggttggtgagcaga 1758133  T

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Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 29425404 - 29425281
Alignment:
Q  15 cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| |||||||||||    
T  29425404 cagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgctt 29425305  T
Q  115 cttggatgatagttggtgagcaga 138  Q
    |||||||||| |||||||||||||    
T  29425304 cttggatgatggttggtgagcaga 29425281  T

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Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 29569708 - 29569815
Alignment:
Q  31 aagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttgg 130  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29569708 aagagcattgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttgg 29569807  T
Q  131 tgagcaga 138  Q
    ||||||||    
T  29569808 tgagcaga 29569815  T

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Target: chr5; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 27918742 - 27918634
Alignment:
Q  31 aagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttgg 130  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  27918742 aagagcgttgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttgg 27918643  T
Q  131 tgagcagaa 139  Q
    |||||||||    
T  27918642 tgagcagaa 27918634  T

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Target: chr5; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 29568559 - 29568629
Alignment:
Q  216 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcactc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568559 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcactc 29568629  T

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Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 1758067 - 1757999
Alignment:
Q  216 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcac 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1758067 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtaaatcac 1757999  T

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Target: chr5; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 29569867 - 29569937
Alignment:
Q  216 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcactc 286  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  29569867 ttggaataatcatggattgtttgtgtttgtgagggatcaaaatggattcttgttgaatctgtagaccactc 29569937  T

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Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 29166929 - 29166883
Alignment:
Q  240 gtttgtgagggatcaacatggattcttgttgaatctgtagatcactc 286  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  29166929 gtttgtgagggatcatcatggattcttgttgaatctgtagatcactc 29166883  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 29425236 - 29425195
Alignment:
Q  243 tgtgagggatcaacatggattcttgttgaatctgtagatcac 284  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  29425236 tgtgagggatcaacatggattcttgttgaatctgtaaatcac 29425195  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 27918573 - 27918541
Alignment:
Q  254 aacatggattcttgttgaatctgtagatcactc 286  Q
    |||||||||||||||||||||||||||||||||    
T  27918573 aacatggattcttgttgaatctgtagatcactc 27918541  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 374
Target Start/End: Original strand, 29568681 - 29568711
Alignment:
Q  344 gttgtaaagtaagtgtgagtggcaaagttat 374  Q
    |||||||||||||||||||||||||||||||    
T  29568681 gttgtaaagtaagtgtgagtggcaaagttat 29568711  T

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Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 27521322 - 27521450
Alignment:
Q  10 aggagcagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaa 109  Q
    |||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  27521322 aggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaa 27521421  T
Q  110 tgcttcttggatgatagttggtgagcaga 138  Q
    ||||||||||||||| ||||||| |||||    
T  27521422 tgcttcttggatgatggttggtgggcaga 27521450  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 18986208 - 18986085
Alignment:
Q  15 cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 114  Q
    ||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18986208 cagagacacagcggctaagagtattcccacggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgctt 18986109  T
Q  115 cttggatgatagttggtgagcaga 138  Q
    |||||||||  |||||||||||||    
T  18986108 cttggatgacggttggtgagcaga 18986085  T

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Target: chr4; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 27462108 - 27461990
Alignment:
Q  15 cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 114  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  27462108 cagagacacagcggctaagagcatttccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt 27462009  T
Q  115 cttggatgatagttggtga 133  Q
    |||||||||| ||||||||    
T  27462008 cttggatgatggttggtga 27461990  T

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Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 27482247 - 27482129
Alignment:
Q  15 cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 114  Q
    ||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  27482247 cagagacacagcggctaagagcattcccgcggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt 27482148  T
Q  115 cttggatgatagttggtga 133  Q
    |||||||||| ||||||||    
T  27482147 cttggatgatggttggtga 27482129  T

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Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 27461919 - 27461851
Alignment:
Q  216 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcac 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27461919 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtaaatcac 27461851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 27482058 - 27481990
Alignment:
Q  216 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcac 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27482058 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtaaatcac 27481990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 27521516 - 27521584
Alignment:
Q  216 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcac 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27521516 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtaaatcac 27521584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 18986019 - 18985951
Alignment:
Q  216 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcac 284  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||    
T  18986019 ttggaataatcatggattgtttctgtttgtgagggatcaccatggattcttgttgaatttgtaaatcac 18985951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 25518576 - 25518468
Alignment:
Q  31 aagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttgg 130  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25518576 aagagcattaccacgaagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggttgg 25518477  T
Q  131 tgagcagaa 139  Q
    |||| ||||    
T  25518476 tgaggagaa 25518468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 25518400 - 25518343
Alignment:
Q  216 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaat 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25518400 ttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaat 25518343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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