View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13017_low_7 (Length: 382)
Name: NF13017_low_7
Description: NF13017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13017_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 364
Target Start/End: Complemental strand, 35116429 - 35116078
Alignment:
| Q |
14 |
atatcacagtctcctaatgtcatatcaatgtctttggtgcctattacttcattactgaattctgtcccaggaaatggatttttaagtcatgcggtgaatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35116429 |
atatcacagtctcctaatgtcatatcaatgtctttggtgcctattacttcattactgaattctgtcccaggaaatggatttttaagtcatgcggtgaatt |
35116330 |
T |
|
| Q |
114 |
tgtatcttagatgtgagtaaacacctgcgactttggttttcctctgcccaatactttttt-ctcttctggatttctattctttgttggaatatatgttgg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35116329 |
tgtatcttagatgtgagtaaacacctgcgactttggttttcctctgcccaatactttttttctcttatggatttctattctttgttggaatatatgttgg |
35116230 |
T |
|
| Q |
213 |
tacatctgtttaataattctgtttcaaacagataaacctgcaatagaagaacttcatcaatttctagagtttcagttgccacgacaatgggcaccgatgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35116229 |
tacatctgtttaataattctgtttcaaacagataaacctgcaatagaagaacttcatcaatttctagagtttcagttgccacgacaatgggcaccgatgt |
35116130 |
T |
|
| Q |
313 |
atggtgatcttcctcttgtattcgaccataagtataaaaggaatgcgtctcc |
364 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35116129 |
atggtgatctgcctcttgtattcgaccataagtataaaaggaatgcgtctcc |
35116078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 365
Target Start/End: Original strand, 47983706 - 47984063
Alignment:
| Q |
14 |
atatcacagtctcctaatgt--catatcaatgtctttggtgcctattacttcattactgaattctgtcccaggaaatggatttttaagtcatgcggtgaa |
111 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
47983706 |
atatcacagtcttctaatgtgtcatatcaatatctttggtgcctattacttcattactgaattctgtcccaggaaatggatttgtaagtcatttggtgaa |
47983805 |
T |
|
| Q |
112 |
tttgtatcttagatgtgagtaa---acacctgcgactttggttttcctctgcccaatacttttttctcttctggatttctattctttgttggaatatatg |
208 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| |
|
|
| T |
47983806 |
tttgtatcttagatgtgagtagtagacacctgcgactttggttttcctctgcccaatactttttcttcttctggatttttattctctgttggaatatatg |
47983905 |
T |
|
| Q |
209 |
ttggtacatctgtttaataattctgtttcaaacagataaacctgcaatagaagaacttcatcaatttctagagtttcagttgccacgacaatgggcaccg |
308 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
47983906 |
ttggtacatctgtttaaaaattctgtttcaaacagataaacctgcaatagaggaacttcatcaatttctagagtttcagttgccacgacaatgcgcaacg |
47984005 |
T |
|
| Q |
309 |
atgtatggtgatcttcctcttgt-attcgaccataagtataaaaggaatgcgtctcct |
365 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
47984006 |
atgtatggtgatctgcctcttgtcttttgaccataagtataaaaggaatgcatctcct |
47984063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University