View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13018_high_1 (Length: 791)
Name: NF13018_high_1
Description: NF13018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13018_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 702; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 25 - 776
Target Start/End: Original strand, 25010967 - 25011720
Alignment:
| Q |
25 |
catcccataacgccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatatca |
124 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25010967 |
catcccataacaccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatgtca |
25011066 |
T |
|
| Q |
125 |
tctagtcagttgcagaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtg |
224 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011067 |
tctagtcagttgcaaaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtg |
25011166 |
T |
|
| Q |
225 |
cggtgagtttcagtttaaaaacaaatttgaaattattactattaataaaggttagcactaatgatcattttacaattgtcccatataggatttgaactca |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25011167 |
cggtgagtttcagtttaaaaacaaatttgaaattattattattaataaaggttagcactaatgatcattttacaattgttccatataggatttgaactca |
25011266 |
T |
|
| Q |
325 |
tgacagtctaatcacgatccaaccatcactaatgtgctgactgtgtgaatacatgaaatttgtgactgcaccaaatccaattctttcactagaagcatcg |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011267 |
tgacagtctaatcacgatccaaccatcactaatgtgctgactgtgtgaatacatgaaatttgtgactgcaccaaatccaattctttcactagaagcatcg |
25011366 |
T |
|
| Q |
425 |
tcattgtaacttcactgttattggggaaaaaacaaaagctcaagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattccactaagc |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011367 |
tcattgtaacttcactgttattggggaaaaaacaaaagctcaagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattccactaagc |
25011466 |
T |
|
| Q |
525 |
tggtgaaactagtatatctg-aaacacgttgctttgtcaaattatcgtttcgtgtaagtgctatacactattcgaagaattccacaggattgaagagtaa |
623 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011467 |
tggtgaaactagtatatctgaaaacacgttgctttgtcaaattatcgtttcgaaaaagtgctatacactattcgaagaattccacaggattgaagagtaa |
25011566 |
T |
|
| Q |
624 |
gtttgaagagaaattattgaaaccgtcaagttgagtactcacagagtgaagaatccctttggttgtaacatcaaatgcacctgcagtaccaccagcagca |
723 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011567 |
gtttgaagagaaattattgaaaccgtcaagttgagtactcacagagtgaagaatccctttggttgtaacatcaaatgcacctgcagtaccaccagcagca |
25011666 |
T |
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| Q |
724 |
ctgatccagtcaacgatcctctgcctgtgtgcatcttgatgatg-tccatctca |
776 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
25011667 |
ctgatccagtcaacgatcctctgcctgtgtgcatcttgattatgatccatctca |
25011720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 4752802 - 4752841
Alignment:
| Q |
284 |
aatgatcattttacaattgtcccatataggatttgaactc |
323 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||| |
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| T |
4752802 |
aatgatcattttacaactgttccatataggatttgaactc |
4752841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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