View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13018_high_13 (Length: 316)

Name: NF13018_high_13
Description: NF13018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13018_high_13
NF13018_high_13
[»] chr7 (13 HSPs)
chr7 (22-193)||(44726584-44726758)
chr7 (195-313)||(44727045-44727163)
chr7 (20-73)||(9680508-9680561)
chr7 (20-65)||(24815612-24815657)
chr7 (22-73)||(21679725-21679776)
chr7 (22-59)||(7092763-7092800)
chr7 (22-59)||(7349862-7349899)
chr7 (22-59)||(20299123-20299160)
chr7 (22-59)||(28487217-28487254)
chr7 (22-59)||(31156495-31156532)
chr7 (22-59)||(38395954-38395991)
chr7 (22-59)||(7470616-7470653)
chr7 (20-52)||(44011290-44011322)
[»] chr3 (13 HSPs)
chr3 (20-73)||(28100579-28100632)
chr3 (22-73)||(23636695-23636746)
chr3 (22-73)||(25635090-25635141)
chr3 (20-73)||(890289-890342)
chr3 (20-73)||(43421952-43422005)
chr3 (22-73)||(28137812-28137863)
chr3 (22-73)||(3306486-3306537)
chr3 (20-58)||(14634699-14634737)
chr3 (26-59)||(1619199-1619232)
chr3 (20-59)||(42991919-42991958)
chr3 (22-59)||(457918-457955)
chr3 (20-52)||(4386466-4386498)
chr3 (20-52)||(15824151-15824183)
[»] chr6 (6 HSPs)
chr6 (20-73)||(3396061-3396114)
chr6 (22-73)||(3630403-3630454)
chr6 (23-66)||(28038244-28038287)
chr6 (26-73)||(26944898-26944945)
chr6 (22-54)||(19696243-19696275)
chr6 (20-73)||(11138125-11138178)
[»] chr1 (12 HSPs)
chr1 (22-73)||(50077174-50077225)
chr1 (22-73)||(8347812-8347863)
chr1 (22-73)||(31423416-31423467)
chr1 (24-73)||(8954347-8954396)
chr1 (24-73)||(25249035-25249084)
chr1 (22-73)||(16430792-16430842)
chr1 (20-58)||(25127561-25127599)
chr1 (22-59)||(27337527-27337564)
chr1 (22-59)||(31736110-31736147)
chr1 (22-58)||(155396-155432)
chr1 (22-58)||(13125992-13126028)
chr1 (22-57)||(6997182-6997217)
[»] chr4 (10 HSPs)
chr4 (20-73)||(36380127-36380180)
chr4 (25-72)||(18535319-18535366)
chr4 (22-73)||(47564466-47564517)
chr4 (31-73)||(27498942-27498984)
chr4 (20-65)||(12396394-12396439)
chr4 (20-65)||(12401336-12401381)
chr4 (22-72)||(16455017-16455067)
chr4 (20-59)||(14788016-14788055)
chr4 (22-59)||(5100711-5100748)
chr4 (20-52)||(3792451-3792483)
[»] chr5 (4 HSPs)
chr5 (25-73)||(20044728-20044776)
chr5 (20-59)||(27912185-27912224)
chr5 (22-59)||(18468666-18468703)
chr5 (22-59)||(26098836-26098873)
[»] chr8 (5 HSPs)
chr8 (22-73)||(21482091-21482142)
chr8 (21-73)||(31574230-31574282)
chr8 (20-59)||(41384459-41384498)
chr8 (20-52)||(17849511-17849543)
chr8 (22-52)||(26268787-26268817)
[»] chr2 (3 HSPs)
chr2 (23-73)||(31733265-31733315)
chr2 (22-59)||(35216179-35216216)
chr2 (20-52)||(13828840-13828872)
[»] scaffold1674 (1 HSPs)
scaffold1674 (22-59)||(90-127)
[»] scaffold0005 (1 HSPs)
scaffold0005 (20-59)||(51675-51714)
[»] scaffold0011 (1 HSPs)
scaffold0011 (20-54)||(35547-35581)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 44726584 - 44726758
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaatgtgcgaataatgtaattttagaatgtaattcaaattcttgatcgtaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  44726584 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaatgtgcgaataatgtaattttagaatgtaattcaaattctttattgtaa 44726683  T
Q  122 ataacattgtttaagtgataaattaaaaa---atatatattcaaaggtatattttctgctaatgtgcagtttatt 193  Q
    |||||||||||||||||||||||||||||   ||||||||| |||||||||||||||| ||||||||||||||||    
T  44726684 ataacattgtttaagtgataaattaaaaatatatatatattgaaaggtatattttctgttaatgtgcagtttatt 44726758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 195 - 313
Target Start/End: Original strand, 44727045 - 44727163
Alignment:
Q  195 ctaccttagcaatattttgttatcaccttccttggtggcggtggaatttgtagatctttttgctttgttgtgggataattgcttttatgcaatttactcc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44727045 ctaccttagcaatattttgttatcaccttccttggtggcggtggaatttgtagatctttttgctttgctgtgggataattgcttttatgcaatttactcc 44727144  T
Q  295 ttcaaaggtggtgattttt 313  Q
    |||||||||||||||||||    
T  44727145 ttcaaaggtggtgattttt 44727163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 9680508 - 9680561
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9680508 gacatcatcactaatttagagtcaaggtggagattgttgtgaaagtgactcaaa 9680561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 24815657 - 24815612
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgtgaaagt 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24815657 gacatcatcactaatttagagtcaaggtggagattgttgtgaaagt 24815612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 21679725 - 21679776
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  21679725 catcatcactaatttaaagtcaaggtggagattattgtgaaagtgcctcaaa 21679776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 7092800 - 7092763
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  7092800 catcatcactaatttagagtcaaggtggagaatgttgt 7092763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 7349899 - 7349862
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  7349899 catcatcactaatttagagtcaaggtggagaatgttgt 7349862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 20299123 - 20299160
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  20299123 catcatcactaatttagagtcaaggtggagaatgttgt 20299160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 28487217 - 28487254
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  28487217 catcatcactaatttagagtcaaggtggagaatgttgt 28487254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 31156532 - 31156495
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  31156532 catcatcactaatttagagtcaaggtggagaatgttgt 31156495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 38395954 - 38395991
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  38395954 catcatcactaatttagagtcaaggtggagaatgttgt 38395991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 7470653 - 7470616
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  7470653 catcatcacaaatttagagtcaaggtggagaatgttgt 7470616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 44011322 - 44011290
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggaga 52  Q
    ||||||||||||| |||||||||||||||||||    
T  44011322 gacatcatcactattttagagtcaaggtggaga 44011290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 28100632 - 28100579
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28100632 gacatcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 28100579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 23636695 - 23636746
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23636695 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgactcaaa 23636746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 25635090 - 25635141
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25635090 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgactcaaa 25635141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 890342 - 890289
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  890342 gacatcatcactaatttagagtcaaggtggagattgttatgaaagtgactcaaa 890289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 43422005 - 43421952
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  43422005 gacatcatcactaatttggagtcaaggtggaaattgttgtgaaagtgcctcaaa 43421952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 28137863 - 28137812
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  28137863 catcatcattaatttaaagtcaaggtggagattgttgtgaaagtgcctcaaa 28137812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 3306486 - 3306537
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    |||||||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  3306486 catcatcactaatttagagttaaggtggagaatgttgtgaaagtgactcaaa 3306537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 14634737 - 14634699
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttg 58  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14634737 gacatcatcactaatttagagtcaaggtggagattgttg 14634699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 1619232 - 1619199
Alignment:
Q  26 atcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||||||    
T  1619232 atcactaatttagagtcaaggtggagattgttgt 1619199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 42991919 - 42991958
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  42991919 gacatcatcactaatttagagtcaaggtgaagaatgttgt 42991958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 457918 - 457955
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  457918 catcattactaatttagagtcaaggtggagaatgttgt 457955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 4386466 - 4386498
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggaga 52  Q
    ||||||||||| |||||||||||||||||||||    
T  4386466 gacatcatcaccaatttagagtcaaggtggaga 4386498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 15824183 - 15824151
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggaga 52  Q
    ||||||||||||||||||||||||| |||||||    
T  15824183 gacatcatcactaatttagagtcaatgtggaga 15824151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 3396061 - 3396114
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3396061 gacatcatcactaatttagagtcaaggtggagattgttgtgaaagtgactcaaa 3396114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 3630454 - 3630403
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3630454 catcatcactaattttgagtcaaggtggagattgttgtgaaagtgcctcaaa 3630403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 28038287 - 28038244
Alignment:
Q  23 atcatcactaatttagagtcaaggtggagattgttgtgaaagtg 66  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  28038287 atcatcactaatttaaagtcaaggtggagattgttgtgaaagtg 28038244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 26944898 - 26944945
Alignment:
Q  26 atcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||||||||||| ||||||||| ||||||||||||||| ||||||    
T  26944898 atcactaatttagagacaaggtggaaattgttgtgaaagtgactcaaa 26944945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 19696243 - 19696275
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagatt 54  Q
    |||||||||||||||||||||||||||||||||    
T  19696243 catcatcactaatttagagtcaaggtggagatt 19696275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 11138125 - 11138178
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||||||| |||||||||| |||||||||| ||||||  ||||| ||||||    
T  11138125 gacatcatcacaaatttagagttaaggtggagaatgttgtagaagtgactcaaa 11138178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 50077225 - 50077174
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50077225 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgactcaaa 50077174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 8347863 - 8347812
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  8347863 catcatcactaatttagagtcaaggtggagattattgtgaaagtgactcaaa 8347812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 31423467 - 31423416
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  31423467 catcatcactaatttagagtcaaggtgaagattgttgtgaaagtgactcaaa 31423416  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 8954347 - 8954396
Alignment:
Q  24 tcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||    
T  8954347 tcatcactaattaagagtcaaggtggaaattgttgtgaaagtgactcaaa 8954396  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 25249084 - 25249035
Alignment:
Q  24 tcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||||||||||| ||||||| |||||||||||||| |||||||||||    
T  25249084 tcatcactaatttagggtcaaggaggagattgttgtgatagtgcctcaaa 25249035  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 16430792 - 16430842
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  16430792 catcatcactaatt-agagtcaaagtggagattgttgtgaaagtgactcaaa 16430842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 25127561 - 25127599
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttg 58  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  25127561 gacatcataactaatttagagtcaaggtggagattgttg 25127599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 27337564 - 27337527
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27337564 catcatcactaatttagagtcaaggtggagaatgttgt 27337527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 31736147 - 31736110
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  31736147 catcatcactaatttagagtcaaggtggagaatgttgt 31736110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 155396 - 155432
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttg 58  Q
    |||||||||| ||||||||||||||||||||||||||    
T  155396 catcatcacttatttagagtcaaggtggagattgttg 155432  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 13126028 - 13125992
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttg 58  Q
    ||||||||||||||||| |||||||||||||||||||    
T  13126028 catcatcactaatttagtgtcaaggtggagattgttg 13125992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 6997182 - 6997217
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgtt 57  Q
    ||||||||||||||||||||||||||||||| ||||    
T  6997182 catcatcactaatttagagtcaaggtggagaatgtt 6997217  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 36380127 - 36380180
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  36380127 gacatcatcactaatttagagtcaaggtggagattgttatgaaagtgactcaaa 36380180  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 18535366 - 18535319
Alignment:
Q  25 catcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaa 72  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  18535366 catcactaatttagagtcaaggtggagattgttgtgaaagtgactcaa 18535319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 47564466 - 47564517
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  47564466 catcatcaataacttagagtcaaggtggagattgttgtgaaagtgcctcaaa 47564517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 27498942 - 27498984
Alignment:
Q  31 taatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27498942 taatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 27498984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 12396439 - 12396394
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgtgaaagt 65  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  12396439 gacatcatcactaatttagattcaaggtggagattgttgtgaaagt 12396394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 12401381 - 12401336
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgtgaaagt 65  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  12401381 gacatcatcactaatttagattcaaggtggagattgttgtgaaagt 12401336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 16455017 - 16455067
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaa 72  Q
    ||||||||||||||| ||||||||||||||||||||||  ||||| |||||    
T  16455017 catcatcactaatttggagtcaaggtggagattgttgtagaagtgactcaa 16455067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 14788055 - 14788016
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  14788055 gacatcatcgctaatttagagtcaaggtggagaatgttgt 14788016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 5100711 - 5100748
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  5100711 catcatcgctaatttagagtcaaggtggagaatgttgt 5100748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 3792451 - 3792483
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggaga 52  Q
    ||||||| |||||||||||||||||||||||||    
T  3792451 gacatcaccactaatttagagtcaaggtggaga 3792483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 20044728 - 20044776
Alignment:
Q  25 catcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20044728 catcactaatttagagtcaaggtggagattgttgtgaaagtgactcaaa 20044776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 27912185 - 27912224
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  27912185 gacatcatcactaatttagagtcaaggtggagaatgttgt 27912224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 18468666 - 18468703
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  18468666 catcatcactaatttagagtcaaggtggagaatgttgt 18468703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 26098873 - 26098836
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  26098873 catcatcactaatttagagtcaaggtggagaatgttgt 26098836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 21482091 - 21482142
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  21482091 catcatcactaatttagagtcaaggtggagattattgtgaaagtgactcaaa 21482142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 31574282 - 31574230
Alignment:
Q  21 acatcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    ||||||| |||||||||||||||||||| ||| ||||||||||||| ||||||    
T  31574282 acatcattactaatttagagtcaaggtgaagaatgttgtgaaagtgactcaaa 31574230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 41384459 - 41384498
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  41384459 gacatcatcactaatttagagtcaaggtggagaatgttgt 41384498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 17849511 - 17849543
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggaga 52  Q
    |||||||||||||||||||||||||||||||||    
T  17849511 gacatcatcactaatttagagtcaaggtggaga 17849543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 52
Target Start/End: Complemental strand, 26268817 - 26268787
Alignment:
Q  22 catcatcactaatttagagtcaaggtggaga 52  Q
    |||||||||||||||||||||||||||||||    
T  26268817 catcatcactaatttagagtcaaggtggaga 26268787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 31733315 - 31733265
Alignment:
Q  23 atcatcactaatttagagtcaaggtggagattgttgtgaaagtgcctcaaa 73  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  31733315 atcatcactagtttagagtcaaggtggagattgttgtgaaagtgactcaaa 31733265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 35216216 - 35216179
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  35216216 catcatcactaatttagagtcaaggtggagaatgttgt 35216179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 13828872 - 13828840
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggaga 52  Q
    ||||||||||| |||||||||||||||||||||    
T  13828872 gacatcatcacaaatttagagtcaaggtggaga 13828840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 127 - 90
Alignment:
Q  22 catcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  127 catcatcactaatttagagtcaaggtggagaatgttgt 90  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 51675 - 51714
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagattgttgt 59  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  51675 gacatcatcgctaatttagagtcaaggtggagaatgttgt 51714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 35547 - 35581
Alignment:
Q  20 gacatcatcactaatttagagtcaaggtggagatt 54  Q
    ||||||||||||||||| |||||||||||||||||    
T  35547 gacatcatcactaatttggagtcaaggtggagatt 35581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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