View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13018_high_4 (Length: 406)

Name: NF13018_high_4
Description: NF13018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13018_high_4
NF13018_high_4
[»] chr4 (2 HSPs)
chr4 (23-378)||(18150477-18150832)
chr4 (22-377)||(1787077-1787428)
[»] chr3 (6 HSPs)
chr3 (23-378)||(28373558-28373913)
chr3 (23-378)||(28381380-28381735)
chr3 (23-378)||(16774646-16775001)
chr3 (23-186)||(15998239-15998402)
chr3 (31-115)||(31374571-31374655)
chr3 (136-178)||(8677806-8677848)
[»] chr8 (1 HSPs)
chr8 (23-378)||(5581462-5581817)
[»] chr1 (1 HSPs)
chr1 (72-234)||(4480161-4480323)
[»] scaffold0002 (1 HSPs)
scaffold0002 (28-378)||(224097-224447)
[»] chr2 (1 HSPs)
chr2 (131-225)||(36596380-36596474)
[»] chr5 (1 HSPs)
chr5 (61-114)||(735221-735274)
[»] chr6 (1 HSPs)
chr6 (193-232)||(31988501-31988540)


Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 23 - 378
Target Start/End: Complemental strand, 18150832 - 18150477
Alignment:
Q  23 tcatcataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgt 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18150832 tcataataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgt 18150733  T
Q  123 tctgttattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18150732 tctgttattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaa 18150633  T
Q  223 ttcgaaaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgagggggca 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18150632 ttcgaaaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgcgggggca 18150533  T
Q  323 tccagtattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18150532 tccagtattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc 18150477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 377
Target Start/End: Original strand, 1787077 - 1787428
Alignment:
Q  22 atcatcataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcg 121  Q
    ||||| |||||||||||||||  |||||| ||||| ||||||| ||| | ||||| |||| | |||  || |||||||||| ||||||||||| | | ||    
T  1787077 atcatgataaagtttacaaattattttcaaatatagttgagggtaaaaaaggaaggtttcaa-agaaactacttggaaaacaagttgattatt-gagacg 1787174  T
Q  122 ttctgttattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggttta 221  Q
    ||||||||||||||| |||||| || ||| |||||||||||||||||| |||  | |||||||||||||||||||| ||||||||||||| |||| ||||    
T  1787175 ttctgttattgtcgttggtccaacaattttattacatcgatgtggattaccctacaaaatagcaatagagctattttagacatttctaat-cgtg-ttta 1787272  T
Q  222 attcgaaaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgagggggc 321  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1787273 attcgaaaacattttgcttcaaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgcgggggc 1787372  T
Q  322 atccagtattgctgaatagagcgcctactttgcatagattgggcatacaggcattt 377  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||    
T  1787373 atccagtattgctgaatagagcgcctactttacatagattggacatacatgcattt 1787428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 23 - 378
Target Start/End: Original strand, 28373558 - 28373913
Alignment:
Q  23 tcatcataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgt 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28373558 tcataataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgt 28373657  T
Q  123 tctgttattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28373658 tctgttattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaa 28373757  T
Q  223 ttcgaaaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgagggggca 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28373758 ttcgaaaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgcgggggca 28373857  T
Q  323 tccagtattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28373858 tccagtattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc 28373913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 23 - 378
Target Start/End: Original strand, 28381380 - 28381735
Alignment:
Q  23 tcatcataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgt 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28381380 tcataataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgt 28381479  T
Q  123 tctgttattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28381480 tctgttattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaa 28381579  T
Q  223 ttcgaaaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgagggggca 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28381580 ttcgaaaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgcgggggca 28381679  T
Q  323 tccagtattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28381680 tccagtattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc 28381735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 23 - 378
Target Start/End: Original strand, 16774646 - 16775001
Alignment:
Q  23 tcatcataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgt 122  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16774646 tcataataaagtttacaaatcgttttcagatataattgagggcaaaaagggaagatttcgagagactctacttggaaaacgagttgattattcggggcgt 16774745  T
Q  123 tctgttattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaa 222  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16774746 tctgttattgtcgttggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagaactatttcagacatttctaattcgtggtttaa 16774845  T
Q  223 ttcgaaaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgagggggca 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16774846 ttcgaaaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgcgggggca 16774945  T
Q  323 tccagtattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16774946 tccagtattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc 16775001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 15998239 - 15998402
Alignment:
Q  23 tcatcataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgt 122  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15998239 tcataataatgtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgt 15998338  T
Q  123 tctgttattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaa 186  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15998339 tttgttattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaa 15998402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 31374655 - 31374571
Alignment:
Q  31 aagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattc 115  Q
    |||||||||||   |||||||||||||||||| |||| |||||||||||| |||||| ||| ||||||||| |||||||||||||    
T  31374655 aagtttacaaactattttcagatataattgagtgcaaggagggaagattttgagagattctacttggaaaatgagttgattattc 31374571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 8677848 - 8677806
Alignment:
Q  136 taggtccatcactttcattacatcgatgtggattgccccgcga 178  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||    
T  8677848 taggaccatcactttcattacatcgatgtgaattaccccgcga 8677806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 23 - 378
Target Start/End: Original strand, 5581462 - 5581817
Alignment:
Q  23 tcatcataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgt 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5581462 tcataataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgt 5581561  T
Q  123 tctgttattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5581562 tctgttattgtcgtaggtccatcactttcattacatcgatgtggattgcccagcgaaatagcaatagagctattttagacatttctaattcgtggtttaa 5581661  T
Q  223 ttcgaaaacattttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgagggggca 322  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5581662 ttcgaaaacactttgcttcgaacataggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgcgggggca 5581761  T
Q  323 tccagtattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5581762 tccagtattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc 5581817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 72 - 234
Target Start/End: Complemental strand, 4480323 - 4480161
Alignment:
Q  72 ggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgttattgtcgtaggtccatcactttcattacatcgatgtggattgc 171  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  4480323 ggaagatttcgagagactctgcttggaaaacgagtttattattcggggtgttctgttattgtcgtaggttcatcactttcattacatcgatgtggtttgc 4480224  T
Q  172 cccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcgaaaacatt 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4480223 cccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcgaaaacatt 4480161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 28 - 378
Target Start/End: Original strand, 224097 - 224447
Alignment:
Q  28 ataaagtttacaaatcgttttcagatataattgagggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattattcggggcgttctgt 127  Q
    ||||||| ||||||||  |||||||| ||||||| || ||||||||||| ||||| |||||||||||||| ||||| || ||||| ||||||||||||||    
T  224097 ataaagtatacaaatcactttcagatgtaattgaaggtaaagagggaaggtttcgcgagactctgcttgggaaacgggtcgattactcggggcgttctgt 224196  T
Q  128 tattgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattcga 227  Q
     ||||| || ||||| || ||||||||||||| ||||||||| || |  || ||||||||| |||| ||||||  |||| ||||||| | ||||||        
T  224197 cattgttgtgggtccttcgctttcattacatcaatgtggattacctctagagatagcaataaagctttttcagctatttgtaattcgcgatttaatcacg 224296  T
Q  228 aaacattttgcttcgaacat-aggagttgctaagagtaaaatacgggaaaaagaaccgattgtatgggaaatacttcaagaagttatgagggggcatcca 326  Q
    ||||      |||| ||  | |||| ||||||| || |||||  ||||||| ||||| |||||||||||||||||||||||||||||| |||| |||||     
T  224297 aaacgcgccacttctaatgtcagga-ttgctaaaaggaaaatttgggaaaaggaacccattgtatgggaaatacttcaagaagttatgcggggacatcct 224395  T
Q  327 gtattgctgaatagagcgcctactttgcatagattgggcatacaggcatttc 378  Q
    ||| || | |||||||| |||||| |||||||||| ||||||||||| ||||    
T  224396 gtactgttaaatagagcacctactctgcatagattaggcatacaggcctttc 224447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 36596380 - 36596474
Alignment:
Q  131 tgtcgtaggtccatcactttcattacatcgatgtggattgccccgcgaaatagcaatagagctatttcagacatttctaattcgtggtttaattc 225  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||    
T  36596380 tgtcgtaggtccaccactttcattacatcgatgtggattgccccgcgaaatagcaacatagctatttcagacaattctaattcgtggtttaattc 36596474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 735274 - 735221
Alignment:
Q  61 agggcaaagagggaagatttcgagagactctgcttggaaaacgagttgattatt 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  735274 agggcaaagagggaagatttcgagagactctgcttgaaaaacgagttgattatt 735221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 31988540 - 31988501
Alignment:
Q  193 tatttcagacatttctaattcgtggtttaattcgaaaaca 232  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  31988540 tatttcagacatttctaattcatggtttaattcgaaaaca 31988501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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