View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13018_high_5 (Length: 397)
Name: NF13018_high_5
Description: NF13018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13018_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 21 - 375
Target Start/End: Complemental strand, 3215311 - 3214958
Alignment:
| Q |
21 |
cttcgcatgcgtataaactccagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacct |
120 |
Q |
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| T |
3215311 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcaaatgcttgcaaaggcaagacaac-ttcgtgttgaattgcgtgctacct |
3215213 |
T |
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| Q |
121 |
cgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcactt |
220 |
Q |
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| T |
3215212 |
cgtttgataatcgtacggtgcaagagtatctcattcatactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcactt |
3215113 |
T |
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| Q |
221 |
agatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctg |
320 |
Q |
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| T |
3215112 |
agatgttattttggaaggtttaccacatggttatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctg |
3215013 |
T |
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| Q |
321 |
ctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgatg |
375 |
Q |
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| T |
3215012 |
ctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgatg |
3214958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 21 - 376
Target Start/End: Complemental strand, 32460826 - 32460471
Alignment:
| Q |
21 |
cttcgcatgcgtataaactccagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacct |
120 |
Q |
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| T |
32460826 |
cttcgcatgcgtatgaacttcggaacaaacttgtgacctattttcacaagcagatgcgtgcaaaggcaaggcagt-tacgtgttgaactgcgttctactt |
32460728 |
T |
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| Q |
121 |
cgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgctt-caattgatgatccaattcctgtcaatcagcact |
219 |
Q |
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| T |
32460727 |
ctcttgataatcgtacggtacaggagcatcttcttcgcattcgcaatttaattgataatcttgctttccattggtgatccagttcccattactcagcatt |
32460628 |
T |
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| Q |
220 |
tagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctct |
319 |
Q |
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| T |
32460627 |
tagatgtaattttagaaggtttaccacaagagtatagtccagtgatttcagttgttgaaagcaaatttgacactattgatattgatgaggtagagtctct |
32460528 |
T |
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| Q |
320 |
gctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgatgt |
376 |
Q |
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| T |
32460527 |
gttaattgctcatgagactcgtcttgacaagttcaagaagaagactattgatgatgt |
32460471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 195 - 358
Target Start/End: Complemental strand, 36399611 - 36399448
Alignment:
| Q |
195 |
gatccaattcctgtcaatcagcacttagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgtta |
294 |
Q |
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|||||| ||||||| ||||| || || ||||| ||||| ||||||||||| || | | |||||| ||||| ||||| || || || || |||||||||| |
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| T |
36399611 |
gatccagttcctgttaatcaacatttggatgtgattttagaaggtttaccgcaagattttagtcctgttatatctgtagtggaaagcaaatttgatgtta |
36399512 |
T |
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| Q |
295 |
ttgacatagatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaagttcaagaa |
358 |
Q |
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| T |
36399511 |
ttgacgttgacgaagttgagtctcttcttcttgctcatgaaacacgtcttgataaattcaagaa |
36399448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 358
Target Start/End: Complemental strand, 52665923 - 52665850
Alignment:
| Q |
285 |
tttgatgttattgacatagatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaagttcaagaa |
358 |
Q |
| |
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||||||||||||||||| || || ||||| ||||| || ||||||||||||| |||||||| || |||||||| |
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| T |
52665923 |
tttgatgttattgacattgacgaagttgagtctcttcttcttgctcatgaaacacgtcttgataaattcaagaa |
52665850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 358
Target Start/End: Complemental strand, 24789452 - 24789296
Alignment:
| Q |
202 |
ttcctgtcaatcagcacttagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacat |
301 |
Q |
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||||||| ||||| || || ||||| ||||| |||||||||||||| | | |||||| |||| | ||| || || || || ||||||||||||||| | |
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| T |
24789452 |
ttcctgttaatcaacatttggatgtgattttagaaggtttaccacaagattttagtcctattatatttgtagtggaaagcaaatttgatgttattgacgt |
24789353 |
T |
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| Q |
302 |
agatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaagttcaagaa |
358 |
Q |
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|| || ||||| ||||| || || |||||||||| |||||||| || |||||||| |
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| T |
24789352 |
tgacgaagttgagtctcttcttcttactcatgaaacacgtcttgataaattcaagaa |
24789296 |
T |
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