View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13019_high_6 (Length: 229)
Name: NF13019_high_6
Description: NF13019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13019_high_6 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 5160002 - 5160213
Alignment:
| Q |
1 |
ggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacacattgaaactgaaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| | ||||||| |||||||||||||||||| |
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| T |
5160002 |
ggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagacattgaaactgaaaaaa |
5160101 |
T |
|
| Q |
101 |
caa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaagggagtgtcattcctacttttctttcttatca |
199 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5160102 |
caaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatca |
5160201 |
T |
|
| Q |
200 |
atacaatttgat |
211 |
Q |
| |
|
|||||||||||| |
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|
| T |
5160202 |
atacaatttgat |
5160213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 5172918 - 5173130
Alignment:
| Q |
1 |
ggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacacattgaaactgaaaaaa |
100 |
Q |
| |
|
|||||||||||| | | || |||||||||||| | |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5172918 |
ggatcattttcacttatcattttggctaatcactccaatcttcagcatctacatatttcatcgaaaaacagcactggagtacacattgaaactgaaaaaa |
5173017 |
T |
|
| Q |
101 |
caa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaagggagtgtcattcctacttttctttcttatca |
199 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5173018 |
caaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatca |
5173117 |
T |
|
| Q |
200 |
atacaatttgata |
212 |
Q |
| |
|
||| ||||||||| |
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|
| T |
5173118 |
atataatttgata |
5173130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 5195644 - 5195863
Alignment:
| Q |
1 |
ggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacacattgaaactgaaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| | ||||||| |||||||||||||||||| |
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|
| T |
5195644 |
ggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagacattgaaactgaaaaaa |
5195743 |
T |
|
| Q |
101 |
caa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaagggagtgtcattcctacttttctttcttatca |
199 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| |
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|
| T |
5195744 |
caaagtggtttcctaaatttcaattgaagtcacttattgttagaaattgcaacctaaacaaggacgaaggaagtgtcattcctacttttctttcatatca |
5195843 |
T |
|
| Q |
200 |
atacaatttgatattcttgg |
219 |
Q |
| |
|
||| |||||| ||| ||||| |
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|
| T |
5195844 |
atataatttggtatacttgg |
5195863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 4842607 - 4842395
Alignment:
| Q |
1 |
ggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacacattgaaactgaaaaaa |
100 |
Q |
| |
|
|||||||||||| | | || |||||||||||| | |||||||| | ||||||||||||||| |||||||| | |||||||||||||||||||||||||| |
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|
| T |
4842607 |
ggatcattttcacttatcaatttggctaatcactccaatcttcagcatctatatatttcatctaaaaacagtattggagtacacattgaaactgaaaaaa |
4842508 |
T |
|
| Q |
101 |
caa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaagggagtgtcattcctacttttctttcttatca |
199 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||||||| |
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|
| T |
4842507 |
caaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctacttttctttcttatca |
4842408 |
T |
|
| Q |
200 |
atacaatttgata |
212 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
4842407 |
atataatttgata |
4842395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5182250 - 5182468
Alignment:
| Q |
1 |
ggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacacattgaaactgaaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||| | ||||||||||||| || ||||||| |||||| | ||||||||||||||| | |
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|
| T |
5182250 |
ggatcattttcattgagcactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacag---tggagttctcattgaaactgaaaaga |
5182346 |
T |
|
| Q |
101 |
caa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaagggagtgtcattcctacttttctttcttatca |
199 |
Q |
| |
|
||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |
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|
| T |
5182347 |
caaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacaaggagaaaggaggtgtcattcctacttttctttcatatca |
5182446 |
T |
|
| Q |
200 |
atacaatttgatattcttggac |
221 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
5182447 |
atataatttgatattcttggac |
5182468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4857081 - 4856863
Alignment:
| Q |
1 |
ggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacacattgaaactgaaaaaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | ||||||| | ||||||||||||| || ||||||| |||||| | ||||||||||||||| | |
|
|
| T |
4857081 |
ggatcattttcattgaccactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacag---tggagttctcattgaaactgaaaaga |
4856985 |
T |
|
| Q |
101 |
caa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaagggagtgtcattcctacttttctttcttatca |
199 |
Q |
| |
|
||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| ||||| |
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|
| T |
4856984 |
caaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacatggacgaaggaagtgtcattcctacttttctttcatatca |
4856885 |
T |
|
| Q |
200 |
atacaatttgatattcttggac |
221 |
Q |
| |
|
||| |||||| ||||||||||| |
|
|
| T |
4856884 |
atataatttggtattcttggac |
4856863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 5213810 - 5214021
Alignment:
| Q |
1 |
ggatcattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacacattgaaactgaaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||| | | ||||||||||||||| ||| ||| ||| | | |||||||||||||||| | |
|
|
| T |
5213810 |
ggatcattttcattgagcactttggctaatcactccaatctccagcatctatatatttcatcacaaa---gcattggtgcaaacattgaaactgaaaaga |
5213906 |
T |
|
| Q |
101 |
caa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaagggagtgtcattcctacttttctttcttatca |
199 |
Q |
| |
|
||| |||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
5213907 |
caaagtggttacccaaatttcaattgaagacactcattcttagaaattgcaacttaaacaaggacaaaggaagtgtcattcctacttttctttcatatca |
5214006 |
T |
|
| Q |
200 |
atacaatttgatatt |
214 |
Q |
| |
|
||| | ||||||||| |
|
|
| T |
5214007 |
atatagtttgatatt |
5214021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 221
Target Start/End: Original strand, 7142256 - 7142402
Alignment:
| Q |
75 |
tggagtacacattgaaactgaaaaaacaa-gtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaagggagt |
173 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||||||||| ||||||| | | |||| || ||| ||||||||||| ||||| ||||||||| | | |
|
|
| T |
7142256 |
tggagtacacgttgaaactgaaaatacaaagtggtttcctagatttcaactacatacacttatg-ttaaaaattgcaaccaaaacatggacaaaggaaat |
7142354 |
T |
|
| Q |
174 |
gtcattcctacttttctttcttatcaatacaatttgatattcttggac |
221 |
Q |
| |
|
|||||||||| |||| |||| |||||| | |||||| |||||||||| |
|
|
| T |
7142355 |
gtcattcctagttttttttcatatcaacataatttggcattcttggac |
7142402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 5202790 - 5202885
Alignment:
| Q |
5 |
cattttcattgagcactttggctaatcatttcaatcttcgggttctatatatttcatcgaaaaacagcactggagtacacattgaaactgaaaaaacaa |
103 |
Q |
| |
|
|||||||| | ||||||||||||||||| |||| |||| || |||||||||||| || | | |||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
5202790 |
cattttcagtaagcactttggctaatcacttcacgcttcaggatctatatatttcctc---agaaagcattggagaacacattgaaacttaaaaaacaa |
5202885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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