View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13019_low_1 (Length: 411)

Name: NF13019_low_1
Description: NF13019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13019_low_1
NF13019_low_1
[»] chr2 (3 HSPs)
chr2 (1-396)||(8020965-8021356)
chr2 (287-391)||(22792281-22792385)
chr2 (351-391)||(22965811-22965851)
[»] chr3 (33 HSPs)
chr3 (3-395)||(28151785-28152175)
chr3 (1-395)||(17744115-17744503)
chr3 (1-395)||(19045435-19045823)
chr3 (40-391)||(11421393-11421743)
chr3 (124-395)||(27920463-27920730)
chr3 (255-395)||(30993721-30993861)
chr3 (255-396)||(27954559-27954700)
chr3 (255-395)||(8538720-8538860)
chr3 (120-394)||(27430588-27430870)
chr3 (38-164)||(28037611-28037737)
chr3 (46-183)||(8539081-8539218)
chr3 (255-394)||(28037895-28038034)
chr3 (255-393)||(28163032-28163170)
chr3 (253-394)||(28479461-28479602)
chr3 (253-394)||(28508644-28508785)
chr3 (255-394)||(28057568-28057707)
chr3 (255-394)||(28067993-28068132)
chr3 (255-395)||(18078836-18078976)
chr3 (38-112)||(27458741-27458815)
chr3 (350-395)||(27458432-27458477)
chr3 (19-111)||(11421140-11421232)
chr3 (330-394)||(26138821-26138885)
chr3 (43-139)||(26139089-26139185)
chr3 (255-394)||(26204229-26204365)
chr3 (40-139)||(28162792-28162891)
chr3 (357-394)||(26109937-26109974)
chr3 (38-139)||(26110202-26110303)
chr3 (38-143)||(26127278-26127383)
chr3 (357-394)||(28187144-28187181)
chr3 (121-165)||(18076983-18077027)
chr3 (279-394)||(28136724-28136839)
chr3 (38-143)||(26177328-26177433)
chr3 (67-139)||(26204494-26204566)
[»] scaffold0922 (1 HSPs)
scaffold0922 (38-395)||(1910-2264)
[»] scaffold1142 (1 HSPs)
scaffold1142 (38-129)||(530-621)
[»] scaffold0257 (1 HSPs)
scaffold0257 (279-394)||(19507-19622)


Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 8020965 - 8021356
Alignment:
Q  1 tcattttgaagttaaccttcttctttctcaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttccc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020965 tcattttgaagttaaccttcttctttcccaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttccc 8021064  T
Q  101 aaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatca-nnnnnnn 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  8021065 aaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcattttttta 8021164  T
Q  200 aaattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||    
T  8021165 aaattaattttctagtgctcaaatatgcataaacattatttcatgtac-----tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgc 8021259  T
Q  300 attgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttcat 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8021260 attgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctctgttgactgatttccttgttaagcatccttcat 8021356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 391
Target Start/End: Original strand, 22792281 - 22792385
Alignment:
Q  287 aagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaag 386  Q
    ||||||| |||| ||||||| | ||||||||||| | || || ||| ||||| |||| | |   ||||| ||||||||||||||||||||| ||||||||    
T  22792281 aagttctccttgtattgtcaaatgggagcttgagcaactggtctccgagaattatttggattacgagaacttgtctttgttgactgatttctttgttaag 22792380  T
Q  387 catcc 391  Q
     ||||    
T  22792381 tatcc 22792385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 22965811 - 22965851
Alignment:
Q  351 gagaaattgtctttgttgactgatttccttgttaagcatcc 391  Q
    ||||| ||||||||||||||||||||| |||||||| ||||    
T  22965811 gagaacttgtctttgttgactgatttctttgttaagtatcc 22965851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 3 - 395
Target Start/End: Original strand, 28151785 - 28152175
Alignment:
Q  3 attttgaagttaacct-tcttctttctcaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttccca 101  Q
    ||||||||||| | || |||| |||| || ||||| ||||||||||||||||||||  |||||||||||| ||| ||||||| |||| | |||||| | |    
T  28151785 attttgaagtttagctctcttgtttcccatcttttgtcagtttctctaaatgatgataatgtcatgaaagcaagctcaaatactgaggatcagttttcaa 28151884  T
Q  102 aggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnna- 200  Q
    |||| ||| | |||||||||||||||||||||||||||||||||| |||||||| |||||||||| || || ||||||||||||| | |               
T  28151885 aggatgataacatattagtttccaaatcaagaccctcttctattgcatctcagtttccttcaaagccttctgaaggtattttatttctttgttttatttt 28151984  T
Q  201 -aattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgc 299  Q
     ||||||||| || ||||| ||||||||||||  ||| |||| | |||| |||     ||||| |||||||||| |||||||||||||||||||||||      
T  28151985 taattaatttacttgtgcttaaatatgcataattattctttcctatactttca-----ggggacccttctcaaatagatgaagatttaagttcttctttt 28152079  T
Q  300 attgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttca 395  Q
     |||||||  ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28152080 gttgtcaccggggagcttgagaatctagtctccaataatcatttggctattgagaaattgtctttgttgactgacttccttgttaagcatccttca 28152175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 17744503 - 17744115
Alignment:
Q  1 tcattttgaagttaacct-tcttctttctcaccttttctc-agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttc 98  Q
    ||||||||||||| | || |||||||||||||| ||| || |||||||||||||||||| |||||  |||||||||| |||||||||||| | || ||||    
T  17744503 tcattttgaagttgaactctcttctttctcaccctttgtccagtttctctaaatgatgatgatgttgtgaaagtaagctcaaatattgaggatcaatttc 17744404  T
Q  99 ccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnn 198  Q
    | ||  | ||||||||||||||||||||||||| ||| |||| ||||| ||| |||| |||||||||| |||||  |||||||||||||| |||          
T  17744403 ctaaaaatgatgaaatattagtttccaaatcaataccatcttgtattgcatcccagtatccttcaaagcctactggaggtattttattgcttcattttat 17744304  T
Q  199 naaattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttg 298  Q
      |||||||||||| ||||||||||| || |||  ||| |||| | |||     | |||| ||| ||||||||||   | |||||||| ||||||||||     
T  17744303 ctaattaattttcttgtgctcaaataggcttaattattctttcctatac-----tttcagaggacccttctcaaa---aagaagatttcagttcttcttt 17744212  T
Q  299 cattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttca 395  Q
      ||||||  |||||||||||  | ||||| |||||||| ||||| | |  |||||| |||||||| |||||||||||| |||||||||||||||||    
T  17744211 gtttgtcaagagggagcttgatcaactagtctccaagaagcatttcgattatgagaacttgtcttttttgactgatttctttgttaagcatccttca 17744115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 19045823 - 19045435
Alignment:
Q  1 tcattttgaagttaacct-tcttctttctcaccttttctc-agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttc 98  Q
    ||||||||||||| | || |||||||||||||| ||| || |||||||||||||||||| |||||  |||||||||| |||||||||||| | || ||||    
T  19045823 tcattttgaagttgaactctcttctttctcaccctttgtccagtttctctaaatgatgatgatgttgtgaaagtaagctcaaatattgaggatcaatttc 19045724  T
Q  99 ccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnn 198  Q
    | ||  | ||||||||||||||||||||||||| ||| |||| ||||| ||| |||| |||||||||| |||||  |||||||||||||| |||          
T  19045723 ctaaaaatgatgaaatattagtttccaaatcaataccatcttgtattgcatcccagtatccttcaaagcctactggaggtattttattgcttcattttat 19045624  T
Q  199 naaattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttg 298  Q
      |||||||||||| ||||||||||| || |||  ||| |||| | |||     | |||| ||| ||||||||||   | |||||||| ||||||||||     
T  19045623 ctaattaattttcttgtgctcaaataggcttaattattctttcctatac-----tttcagaggacccttctcaaa---aagaagatttcagttcttcttt 19045532  T
Q  299 cattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttca 395  Q
      ||||||  |||||||||||  | ||||| |||||||| ||||| | |  |||||| |||||||| |||||||||||| |||||||||||||||||    
T  19045531 gtttgtcaagagggagcttgatcaactagtctccaagaagcatttcgattatgagaacttgtcttttttgactgatttctttgttaagcatccttca 19045435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 40 - 391
Target Start/End: Original strand, 11421393 - 11421743
Alignment:
Q  40 agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 139  Q
    |||||||| ||||||||| | | ||| ||||||||||||||||| |||| |||||||||| | ||| ||||| |||||||||||||||||||||||||||    
T  11421393 agtttctcgaaatgatgatgctttcaagaaagtaagatcaaatactgaggaacagtttcctacggatgatgatatattagtttccaaatcaagaccctct 11421492  T
Q  140 tctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatca-------nnnnnnnaaattaattttctagtgctcaaatatgcataaa 232  Q
    | ||||| |||||||| ||||| |||  ||  | ||||||||||||||| |||              || || ||||| | ||||  ||||||||||||     
T  11421493 tatattgcatctcagtatcctttaaaacctgttgaaggtattttattgcttcagtttatttttaattaattttattttattgtgcataaatatgcataat 11421592  T
Q  233 cattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaag---ggagcttgagaatctagtt 329  Q
     |||||||| | |||     | |||||||| |||||||||| || |||||||||      ||||||  ||||||||||   |||||||||||||||||||    
T  11421593 tattatttcctatac-----tttcaggggacccttctcaaatagttgaagattt------ttcttgggttgtcacaagggaggagcttgagaatctagtt 11421681  T
Q  330 tccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatcc 391  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||    
T  11421682 tccaagaaccatttggctattgagaacttgtctttgttgactgaattccttgttaagcatcc 11421743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 124 - 395
Target Start/End: Original strand, 27920463 - 27920730
Alignment:
Q  124 caaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnna--aattaattttctagtgctcaa 221  Q
    |||||||||| |||||||||||| |||||||| |||||||||| || || ||||||||||||||  |||          ||||| ||||||  |||||||    
T  27920463 caaatcaagaacctcttctattgcatctcagtttccttcaaagccttctgaaggtattttattgtttcattttatttttaattagttttctt-tgctcaa 27920561  T
Q  222 atatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgaga 321  Q
    ||||||||||  ||| |||| | |||| |||     ||||| |||||||||| |||| ||||| ||||||| ||||   |||| |||| |||||||||||    
T  27920562 atatgcataattattctttcctatactttca-----ggggacccttctcaaatagataaagatctaagttcatctttggttgtgacaaaggagcttgaga 27920656  T
Q  322 atctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttca 395  Q
    ||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  27920657 atctagtctccaagaagcatttggctattgagaacttgtctttgttgactgacttccttgttaagcatccttca 27920730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 255 - 395
Target Start/End: Original strand, 30993721 - 30993861
Alignment:
Q  255 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 354  Q
    |||||||| |||||||||| |||||||||||||||||||||||   |||||||| ||||||||||||||||||| ||||||||  ||||||||||||| |    
T  30993721 tcaggggacccttctcaaatagatgaagatttaagttcttctttggttgtcacaggggagcttgagaatctagtctccaagaagtatttagctattgata 30993820  T
Q  355 aattgtctttgttgactgatttccttgttaagcatccttca 395  Q
    | ||||  |||||||| |||||||||||||| |||||||||    
T  30993821 acttgtacttgttgacggatttccttgttaatcatccttca 30993861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 255 - 396
Target Start/End: Original strand, 27954559 - 27954700
Alignment:
Q  255 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 354  Q
    |||||||| |||||||||| ||||| |||||||||||||| ||   ||||||||||||||||||| ||| || | ||||| || ||||| ||||||||||    
T  27954559 tcaggggacccttctcaaatagatggagatttaagttcttatttggttgtcacaagggagcttgaaaatataatctccaataagcatttggctattgaga 27954658  T
Q  355 aattgtctttgttgactgatttccttgttaagcatccttcat 396  Q
    | ||||||||||||||||||||||| ||||||||||||||||    
T  27954659 acttgtctttgttgactgatttcctagttaagcatccttcat 27954700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 255 - 395
Target Start/End: Complemental strand, 8538860 - 8538720
Alignment:
Q  255 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 354  Q
    |||||||| |||||||||  |||||||||||||| ||||||||   ||||||||||||||||||| |||||||| |||||||||||||| |||||||| |    
T  8538860 tcaggggacccttctcaattagatgaagatttaatttcttctttggttgtcacaagggagcttgaaaatctagtctccaagaatcatttggctattgata 8538761  T
Q  355 aattgtctttgttgactgatttccttgttaagcatccttca 395  Q
    |  |||| ||||||||  ||||||||||||| |||||||||    
T  8538760 acatgtccttgttgaccaatttccttgttaaccatccttca 8538720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 120 - 394
Target Start/End: Complemental strand, 27430870 - 27430588
Alignment:
Q  120 tttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatca--nnnnnnnaaattaattttctagtgc 217  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||| || || ||| ||||||||||| |||          |||||||||||| ||||    
T  27430870 tttccaaatcaagaccctcttatattgcatctcagtgtccttcaaagcctgctgaagttattttattgcttcattgtagttttaattaattttcttgtgc 27430771  T
Q  218 tcaaatatgcataaacattatttcatgtactctcatctcaggggaacct------tctcaaagagatgaagatttaagttcttcttgcattgtcacaagg 311  Q
    | || || ||||||  ||  | |  | |||| |  |  |||||||||||      ||||||| ||||||| |||| ||||| ||||    |||||||| |    
T  27430770 tgaagtaggcataattatattgttctttactatacttacaggggaaccttctcaatctcaaatagatgaatattttagttcgtctttggctgtcacaaag 27430671  T
Q  312 gagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttc 394  Q
    || || ||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  27430670 gaactcgagaatctagtctccaagaatcatttggctatcgagaacttgtctttgttgactgatttccttgttaagcatccttc 27430588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 28037611 - 28037737
Alignment:
Q  38 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 137  Q
    ||||||| || |||||||||  |||||||||||||||| |||||||||||| | |||||| | ||||| ||||| || ||||||||||||||||||||||    
T  28037611 tcagtttatccaaatgatgataatgtcatgaaagtaagttcaaatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccct 28037710  T
Q  138 cttctattgaatctcagtgtccttcaa 164  Q
    ||||||||| |||||| | ||||||||    
T  28037711 cttctattgcatctcattttccttcaa 28037737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 8539218 - 8539081
Alignment:
Q  46 tctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctatt 145  Q
    |||||||||||| | || |||||||||||| ||||||||| || |  ||||||| ||||| || ||||||||||||||||||||||||| ||||| ||||    
T  8539218 tctaaatgatgatgttgccatgaaagtaagctcaaatattcagaatgagtttcctaaggatgaagaaatattagtttccaaatcaagactctcttgtatt 8539119  T
Q  146 gaatctcagtgtccttcaaagtctactcaaggtatttt 183  Q
      |||||||| |||||||||| || || ||||||||||    
T  8539118 ccatctcagtctccttcaaagccttctgaaggtatttt 8539081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 255 - 394
Target Start/End: Original strand, 28037895 - 28038034
Alignment:
Q  255 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 354  Q
    |||||||| |||||||||| |||  ||| |||||||| |||||   |||||| |  ||| |||||||||||||| || ||||| ||||| |||||||| |    
T  28037895 tcaggggacccttctcaaatagaaaaagctttaagttattctttggttgtcaaagcggaacttgagaatctagtctctaagaagcatttggctattgata 28037994  T
Q  355 aattgtctttgttgactgatttccttgttaagcatccttc 394  Q
    | ||||||||||||||||||||| ||||||||||||||||    
T  28037995 atttgtctttgttgactgatttctttgttaagcatccttc 28038034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 393
Target Start/End: Original strand, 28163032 - 28163170
Alignment:
Q  255 tcaggggaaccttctcaaagagatgaagatttaagttcttctt-gcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgag 353  Q
    |||||||| |||||||||| ||  |||||||| |||||||||| |||| ||||  |||||||||||| | ||||| |||||||| ||||| | |  |||     
T  28163032 tcaggggacccttctcaaaaagtagaagatttcagttcttctttgcat-gtcaagagggagcttgagcaactagtctccaagaagcatttcgattatgat 28163130  T
Q  354 aaattgtctttgttgactgatttccttgttaagcatcctt 393  Q
    || ||||||||||||||||||||| |||||||||||||||    
T  28163131 aacttgtctttgttgactgatttctttgttaagcatcctt 28163170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 394
Target Start/End: Complemental strand, 28479602 - 28479461
Alignment:
Q  253 tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattga 352  Q
    ||||||| || ||||||||||  |  |||||||||||||||||||   ||||||  || ||||||||| | ||||| |||||||||||||| | |  |||    
T  28479602 tctcaggagacccttctcaaaatgtagaagatttaagttcttctttgcttgtcaagagtgagcttgaggaactagtctccaagaatcatttggattgtga 28479503  T
Q  353 gaaattgtctttgttgactgatttccttgttaagcatccttc 394  Q
    ||| |||||||||||||||| ||||||||||| | |||||||    
T  28479502 gaacttgtctttgttgactgctttccttgttaggaatccttc 28479461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 394
Target Start/End: Complemental strand, 28508785 - 28508644
Alignment:
Q  253 tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattga 352  Q
    ||||||| || ||||||||||  |  |||||||||||||||||||   ||||||  || ||||||||| | ||||| ||||||||| |||| | |  |||    
T  28508785 tctcaggagacccttctcaaaatgtagaagatttaagttcttctttgcttgtcaagagtgagcttgagcaactagtctccaagaattatttggattgtga 28508686  T
Q  353 gaaattgtctttgttgactgatttccttgttaagcatccttc 394  Q
    ||| |||||||||||||||| ||||||||||||| |||||||    
T  28508685 gaacttgtctttgttgactgttttccttgttaagaatccttc 28508644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 394
Target Start/End: Original strand, 28057568 - 28057707
Alignment:
Q  255 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 354  Q
    |||||||  |||||||||| ||  |||||||| ||||||||||   ||||||  |||||||||||| | ||| | |||||||| ||||| | |  |||||    
T  28057568 tcaggggttccttctcaaaaagtagaagatttcagttcttctttgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgaga 28057667  T
Q  355 aattgtctttgttgactgatttccttgttaagcatccttc 394  Q
    |  |||||||||||||||||||| ||||||| ||||||||    
T  28057668 acgtgtctttgttgactgatttctttgttaaacatccttc 28057707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 394
Target Start/End: Original strand, 28067993 - 28068132
Alignment:
Q  255 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 354  Q
    |||||||  |||||||||| ||  |||||||| ||||||||||   ||||||  |||||||||||| | ||| | |||||||| ||||| | |  |||||    
T  28067993 tcaggggttccttctcaaaaagtagaagatttcagttcttctttgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgaga 28068092  T
Q  355 aattgtctttgttgactgatttccttgttaagcatccttc 394  Q
    |  |||||||||||||||||||| ||||||| ||||||||    
T  28068093 acgtgtctttgttgactgatttctttgttaaacatccttc 28068132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 395
Target Start/End: Complemental strand, 18078976 - 18078836
Alignment:
Q  255 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 354  Q
    ||||||||  ||||||| | ||| |||||||||||||||||||   ||||| | |||||||||||||| ||||| ||  ||||  ||||   |  |||||    
T  18078976 tcaggggactcttctcatatagaagaagatttaagttcttctttgcttgtcgcgagggagcttgagaaactagtctctgagaagtatttgaattatgaga 18078877  T
Q  355 aattgtctttgttgactgatttccttgttaagcatccttca 395  Q
    | || |||||||||||||||||| |||||||| ||||||||    
T  18078876 acttttctttgttgactgatttctttgttaagaatccttca 18078836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 27458815 - 27458741
Alignment:
Q  38 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaa 112  Q
    |||||||||||||||||||| | |||||| |||||||| |||||||||||| | |||||||| || || ||||||    
T  27458815 tcagtttctctaaatgatgatgctgtcataaaagtaagctcaaatattgagaatcagtttcctaacgatgatgaa 27458741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 27458477 - 27458432
Alignment:
Q  350 tgagaaattgtctttgttgactgatttccttgttaagcatccttca 395  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||    
T  27458477 tgagaacttgtctttgttgactgatttccttgttaagcacccttca 27458432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 11421140 - 11421232
Alignment:
Q  19 tcttctttctcaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatga 111  Q
    ||||||||| |||  ||| |||||| ||||||||||||| | ||||||||||| |||  |||||||||||||||| || || ||||| |||||    
T  11421140 tcttctttcccactgtttgtcagttgctctaaatgatgatgctgtcatgaaagcaagcacaaatattgagcaacatttacctaaggatgatga 11421232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 394
Target Start/End: Complemental strand, 26138885 - 26138821
Alignment:
Q  330 tccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttc 394  Q
    |||||||||||||| | |  || ||| ||||||||||||||||||||| ||||||||||||||||    
T  26138885 tccaagaatcatttggattgtgggaatttgtctttgttgactgatttctttgttaagcatccttc 26138821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 26139185 - 26139089
Alignment:
Q  43 ttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 139  Q
    |||||||||||||||   | ||| ||||||||| |||||||||||| |||||||||| | ||| ||||| ||| ||||||| ||||| | |||||||    
T  26139185 ttctctaaatgatgattctttcaagaaagtaagctcaaatattgaggaacagtttcctatggatgatgatataatagtttctaaatctaaaccctct 26139089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 394
Target Start/End: Complemental strand, 26204365 - 26204229
Alignment:
Q  255 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 354  Q
    |||| ||| |||||||||| ||   |||||||||||||||  ||| |||||| ||| ||||||||| | ||| | |||||||||||||| | |  ||  |    
T  26204365 tcagaggacccttctcaaaaagtacaagatttaagttctt--tgc-ttgtcaaaagtgagcttgagcaactaatctccaagaatcatttggattgtggaa 26204269  T
Q  355 aattgtctttgttgactgatttccttgttaagcatccttc 394  Q
    | || |||||||||||||||||| ||||||||||||||||    
T  26204268 atttttctttgttgactgatttctttgttaagcatccttc 26204229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 28162792 - 28162891
Alignment:
Q  40 agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 139  Q
    |||||||| ||||||||| | | ||| ||||||||| |||||||||||| |||| ||||| |||   ||||| ||| ||||||||||||| | |||||||    
T  28162792 agtttctcgaaatgatgatgctttcaagaaagtaagctcaaatattgaggaacaatttcctaagattgatgatataatagtttccaaatctaaaccctct 28162891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 26109974 - 26109937
Alignment:
Q  357 ttgtctttgttgactgatttccttgttaagcatccttc 394  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  26109974 ttgtctttgttgactgatttctttgttaagcatccttc 26109937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 26110303 - 26110202
Alignment:
Q  38 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 137  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||||||||||| |||| ||| | ||||| ||||| ||| ||||||||||||| | |||||    
T  26110303 tcaggttctctaaatcatgattctttcaagaaagtaagctcaaatattgaggaacaattttctaaggatgatgatataatagtttccaaatctaaaccct 26110204  T
Q  138 ct 139  Q
    ||    
T  26110203 ct 26110202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 26127383 - 26127278
Alignment:
Q  38 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 137  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||||||||||| |||| ||||  ||||| ||| | ||| ||||||||||||| | |||||    
T  26127383 tcaggttctctaaatcatgattctttcaagaaagtaagctcaaatattgaggaacaatttcataaggatgataatataatagtttccaaatctaaaccct 26127284  T
Q  138 cttcta 143  Q
    ||||||    
T  26127283 cttcta 26127278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 28187144 - 28187181
Alignment:
Q  357 ttgtctttgttgactgatttccttgttaagcatccttc 394  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  28187144 ttgtctttgttgactgatttctttgttaagcatccttc 28187181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 18077027 - 18076983
Alignment:
Q  121 ttccaaatcaagaccctcttctattgaatctcagtgtccttcaaa 165  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||    
T  18077027 ttccaaatcacgaccctcttctattgcatctcagtttccttcaaa 18076983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 394
Target Start/End: Original strand, 28136724 - 28136839
Alignment:
Q  279 gaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttcc 378  Q
    |||||||||||||||||||   ||||||  || ||||||||| | ||||| |||||||||||||| | |  |||||| || ||| | ||||| | |||||    
T  28136724 gaagatttaagttcttctttgtttgtcaagagtgagcttgagcaactagtctccaagaatcatttggattatgagaacttatctctattgacaggtttcc 28136823  T
Q  379 ttgttaagcatccttc 394  Q
    |||||||  |||||||    
T  28136824 ttgttaaaaatccttc 28136839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 26177433 - 26177328
Alignment:
Q  38 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 137  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||| ||||||| |||| ||||  ||||| ||| | ||| ||||||||||||| | |||||    
T  26177433 tcaggttctctaaatcatgattctttcaagaaagtaagctcaattattgaggaacaatttcataaggatgataatataatagtttccaaatctaaaccct 26177334  T
Q  138 cttcta 143  Q
    ||||||    
T  26177333 cttcta 26177328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 26204566 - 26204494
Alignment:
Q  67 gaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 139  Q
    |||||||||||||||||||||| || | ||| |||| || | ||| ||| ||||||||||||| | |||||||    
T  26204566 gaaagtaagatcaaatattgaggaaaattttaccaatgatggtgatataatagtttccaaatctaaaccctct 26204494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 38 - 395
Target Start/End: Original strand, 1910 - 2264
Alignment:
Q  38 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 137  Q
    ||||||| | |||||||||| | | ||||||||||||| ||| |||||||| | || ||||  ||||| |||||||||||||||||||||||||  | ||    
T  1910 tcagtttttttaaatgatgatgctatcatgaaagtaagctcagatattgaggatcaatttcttaaggatgatgaaatattagtttccaaatcaaagctct 2009  T
Q  138 cttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnna--aattaattttctagtgctcaaatatgcataaacat 235  Q
     | |||||| ||||||||||||||||||| || |||||||||||||||||| |||          |||||||||||| ||||| ||||||||||||  ||    
T  2010 gtactattgtatctcagtgtccttcaaagcctgctcaaggtattttattgcttcattttagttttaattaattttcttgtgctaaaatatgcataattat 2109  T
Q  236 tatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaag 335  Q
    |||| | | |||| |||     || || |||||||||||||||||||||||||||| ||||||  ||||||||| ||||||   ||||||||||||| ||    
T  2110 tattacctatactttca-----ggtgacccttctcaaagagatgaagatttaagttattcttgggttgtcacaaaggagctacggaatctagtttccgag 2204  T
Q  336 aatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttca 395  Q
    ||| |||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  2205 aattatttggctattgagaacttgtctttgttgactgatttcctagttaagaatccttca 2264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 530 - 621
Alignment:
Q  38 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatc 129  Q
    |||||| |||||||||| || | ||||||||||||||| | |||||||||| |||||||||| ||||| ||||||||| || ||||| ||||    
T  530 tcagttcctctaaatgacgatgttgtcatgaaagtaagcttaaatattgaggaacagtttcctaaggatgatgaaataataatttcccaatc 621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 279 - 394
Target Start/End: Original strand, 19507 - 19622
Alignment:
Q  279 gaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttcc 378  Q
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T  19507 gaagatttaagttcttcttcgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgagaacatgtctttgttgactgatttct 19606  T
Q  379 ttgttaagcatccttc 394  Q
    ||||||| ||||||||    
T  19607 ttgttaaacatccttc 19622  T

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