View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1301_high_1 (Length: 801)

Name: NF1301_high_1
Description: NF1301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1301_high_1
NF1301_high_1
[»] chr8 (4 HSPs)
chr8 (99-691)||(19926453-19927056)
chr8 (28-82)||(19926261-19926315)
chr8 (459-637)||(14294374-14294557)
chr8 (221-270)||(14294255-14294304)
[»] chr1 (6 HSPs)
chr1 (99-392)||(46615843-46616144)
chr1 (450-640)||(46616154-46616348)
chr1 (28-82)||(46615652-46615706)
chr1 (588-644)||(22581835-22581892)
chr1 (588-644)||(4816337-4816394)
chr1 (588-645)||(33052493-33052550)
[»] chr4 (3 HSPs)
chr4 (705-784)||(10049289-10049368)
chr4 (588-644)||(41499960-41500017)
chr4 (588-644)||(19142112-19142169)
[»] chr5 (2 HSPs)
chr5 (440-569)||(8784368-8784502)
chr5 (590-647)||(38476031-38476089)
[»] scaffold0049 (1 HSPs)
scaffold0049 (588-645)||(46669-46727)
[»] chr3 (1 HSPs)
chr3 (588-644)||(675549-675606)


Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 99 - 691
Target Start/End: Original strand, 19926453 - 19927056
Alignment:
Q  99 gtaatattattatattgatagcacgtttgttttggtaaatggctagtattattgtaacaaaaaagaaaagaacgactagtattgtaatattaattagttc 198  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19926453 gtaatattattatattgatagcacgtttgttttggggaatggctagtattattgtaacaaaaaagaaaagaacgactagtattgtaatattaactagttc 19926552  T
Q  199 aatgattatacagtaaaatatgaattaattaaatagtgtagcattttcctaattttttatattaattaattcataactaattcctgaa-taaattcatat 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  19926553 aatgattatacagtaaaatatgaattaattaaatagtgtagcattttcctaattttttatattaattaattcataactaattcctaaaataaattcatat 19926652  T
Q  298 gttttacaattcaaattcaaaatcaaaacattccacataaatttacttgtgtggtagttgaactaggttgtggtgtgaaatagaagaaaagctttactgc 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19926653 gttttacaattcaaattcaaaatcaaaacattccacataaatttacttgtgtggtagttgaactaggttgtggtgtgaaatagaagaaaagctttgctgc 19926752  T
Q  398 tgagtcaaactgacagatgtggcatagctggttttgtggcataattgtctgatcaaataagggataaatggatgaacggttctctcttaatttatattta 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||    
T  19926753 tgagtcaaactgacagatgtggcatagctggttttgtggcataattgtctaatcaaataaaggataaatggatgaatgattctctcttaatttatattta 19926852  T
Q  498 gaaagacgtagttgacaatattgataattagtcgattattcaatgatgtcataaaatcgcgtagaggataatcgtagattatatatgtaattttttgagt 597  Q
    ||||||| ||||||||   ||||||||||||||||||||||||  || |||||||||||| ||||||||||||||||| ||||||||||||||||| |||    
T  19926853 gaaagacatagttgac---attgataattagtcgattattcaacaatatcataaaatcgcatagaggataatcgtagactatatatgtaatttttttagt 19926949  T
Q  598 accatgtaaattaaatacaatgtaattttttaatatatattattat-------------aattcaaaagttgaaccccctaactcgggttccttgctatg 684  Q
    |||||||||||| |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||| | |||| |    
T  19926950 accatgtaaattgaatacaatgtaattttttaatatatattattataatttttaattaaaattcaaaagttgaaccccctaactcgggttcttggctacg 19927049  T
Q  685 ccactgc 691  Q
    |||||||    
T  19927050 ccactgc 19927056  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 19926261 - 19926315
Alignment:
Q  28 cacccgctgcatcacaattgcactaactctcactcttttcctagctgtgttgttt 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19926261 cacccgctgcatcacaattgcactaactctcactcttttcctagctgtgttgttt 19926315  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 459 - 637
Target Start/End: Original strand, 14294374 - 14294557
Alignment:
Q  459 ggataaatggatgaacgg-ttctctcttaatttatatttagaaagacgtagttgacaatattgataattagtcgattattcaatgatgtcata----aaa 553  Q
    |||||||||||||||| | ||||||| ||| ||||||| ||| ||| ||  | ||||  ||||||||||| | |||||||||| ||| |||||    |||    
T  14294374 ggataaatggatgaactgattctctcgtaagttatattaagagagatgtgttcgacaccattgataattaatggattattcaacgatatcatacataaaa 14294473  T
Q  554 tcgcgtagaggataatcgtagattatatatgtaattttttgagtaccatgtaaattaaatacaatgtaattttttaatatatat 637  Q
    ||| ||||||||||||  || | ||| |||||||||||  |||||| ||||||||| | || ||| ||||||||||||||||||    
T  14294474 tcgtgtagaggataattataaagtatgtatgtaattttcggagtacaatgtaaattgagtaaaatataattttttaatatatat 14294557  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 14294255 - 14294304
Alignment:
Q  221 aattaattaaatagtgtagcattttcctaattttttatattaattaattc 270  Q
    |||||||||| ||||||| |||||||||||||  ||||||||||||||||    
T  14294255 aattaattaattagtgtatcattttcctaattccttatattaattaattc 14294304  T

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Target: chr1 (Bit Score: 168; Significance: 1e-89; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 99 - 392
Target Start/End: Original strand, 46615843 - 46616144
Alignment:
Q  99 gtaatattattatattgatagcacgtttgttttggtaaatggctagtattattgtaacaaaaaagaaaagaacgactagtattgtaatattaattagttc 198  Q
    ||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||      
T  46615843 gtaatattattatcttgatagcacatttgttttggtgaatggctagtattattgtaacaaaaaagaaaagaacggttagtattgtaatattaattagtca 46615942  T
Q  199 aatga---------ttatacagtaaaatatgaattaattaaatagtgtagcattttcctaattttttatattaattaattcataactaattcctgaata- 288  Q
    |||||         ||||||||| |||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||       
T  46615943 aatgagaactactattatacagtgaaatataaattaattaaatagtgtag-attttcctaatttcttatattaattaattcataactaattccttaaact 46616041  T
Q  289 aattcatatgttttacaattcaaattcaaaatcaaaacattccacataaatttacttgtgtggtagttgaactaggttgtggtgtgaaatagaagaaaag 388  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||| | | |||||||||||||||||||||| |||||    
T  46616042 aattcataggttttacaatttaaattcaaaatcaaaacattccacataaatttacctgtgtgggagtcggattaggttgtggtgtgaaatagaa-aaaag 46616140  T
Q  389 cttt 392  Q
    ||||    
T  46616141 cttt 46616144  T

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Target: chr1; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 450 - 640
Target Start/End: Original strand, 46616154 - 46616348
Alignment:
Q  450 tcaaataagggataaatggatgaacggttctctcttaatttata---tttagaaagacgtagttgacaatattgataattagtcgattattcaatgatgt 546  Q
    |||||||| ||||||||||||||||  |||||| ||||||| ||   |||||| ||| ||||||||||||||||||||||||||| |||||||| ||| |    
T  46616154 tcaaataaaggataaatggatgaacaattctcttttaatttgtagtatttagagagatgtagttgacaatattgataattagtcggttattcaacgatat 46616253  T
Q  547 cataaaatcgcgtagaggataatcgtagattatatatgtaattttttgagtaccatgtaaattaaatacaatgtaa-ttttttaatatatattat 640  Q
     ||||||| | | |||||||||| ||||| |||||||||||||||||||||||||  ||||||||||||||| ||| ||||||||||||||||||    
T  46616254 tataaaattgtgcagaggataatagtagactatatatgtaattttttgagtaccacataaattaaatacaatataatttttttaatatatattat 46616348  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 46615652 - 46615706
Alignment:
Q  28 cacccgctgcatcacaattgcactaactctcactcttttcctagctgtgttgttt 82  Q
    |||| ||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  46615652 caccagctgcatcacaattgcactaactctgactcttttcctgactgtgttgttt 46615706  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 588 - 644
Target Start/End: Original strand, 22581835 - 22581892
Alignment:
Q  588 ttttttgagtaccatgtaaattaaatacaatgtaatttttt-aatatatattattata 644  Q
    ||||||||||||  |||||||| |||||||||||||||||| ||||||||||||||||    
T  22581835 ttttttgagtacattgtaaattgaatacaatgtaattttttgaatatatattattata 22581892  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 644
Target Start/End: Original strand, 4816337 - 4816394
Alignment:
Q  588 ttttttgagtaccatgtaaattaaatacaatgtaatttttt-aatatatattattata 644  Q
    ||||||||||||  |||||||| ||||||||||||||||||  |||||||||||||||    
T  4816337 ttttttgagtacattgtaaattgaatacaatgtaattttttggatatatattattata 4816394  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 645
Target Start/End: Complemental strand, 33052550 - 33052493
Alignment:
Q  588 ttttttgagtaccatgtaaattaaatacaatgtaattttttaatatatattattataa 645  Q
    |||||| |||||  || ||||| |||||||||||||||||  ||||||||||||||||    
T  33052550 tttttttagtacattgcaaattgaatacaatgtaatttttggatatatattattataa 33052493  T

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Target: chr4 (Bit Score: 68; Significance: 6e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 705 - 784
Target Start/End: Complemental strand, 10049368 - 10049289
Alignment:
Q  705 ataatttaccgtagtaaactttcatttgcatttgacttattactttccatatttagcattaccaaatattattcccacag 784  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10049368 ataatttaccggagtaaactttcttttgcatttgacttattacattccatatttagcattaccaaatattattcccacag 10049289  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 588 - 644
Target Start/End: Complemental strand, 41500017 - 41499960
Alignment:
Q  588 ttttttgagtaccatgtaaattaaatacaatgtaatttttta-atatatattattata 644  Q
    ||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||||    
T  41500017 ttttttgagtacattgtaaattgaatacaatgtaattttttagatatatattattata 41499960  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 644
Target Start/End: Original strand, 19142112 - 19142169
Alignment:
Q  588 ttttttgagtaccatgtaaattaaatacaatgtaatttttt-aatatatattattata 644  Q
    ||||||||||||  |||||||| ||||||||||||||||||  |||||||||||||||    
T  19142112 ttttttgagtacattgtaaattgaatacaatgtaattttttggatatatattattata 19142169  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 569
Target Start/End: Original strand, 8784368 - 8784502
Alignment:
Q  440 aattgtctgatcaaataagggataaatggatgaacggttctctcttaatttatatttagaaagacgtagttgacaatattgataattagtcgattattca 539  Q
    |||||| | ||||||||  |||| |||||||||||| | ||| | ||||||||||| ||| |||| | |||||||| ||| ||| ||| |||||||||||    
T  8784368 aattgtgtaatcaaatagaggatgaatggatgaacgatcctcccgtaatttatattaagagagacatggttgacaacattcatagttaatcgattattca 8784467  T
Q  540 atgatgtca-----taaaatcgcgtagaggataat 569  Q
    ||||| |||     |||||||| ||||||||||||    
T  8784468 atgatatcaaaacttaaaatcgtgtagaggataat 8784502  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 590 - 647
Target Start/End: Original strand, 38476031 - 38476089
Alignment:
Q  590 ttttgagtaccatgtaaattaaatacaatgtaatttttt-aatatatattattataatt 647  Q
    |||||||||| ||||| |||  || |||||||||||||| |||||||||||||||||||    
T  38476031 ttttgagtacaatgtacattgtatgcaatgtaattttttgaatatatattattataatt 38476089  T

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Target: scaffold0049 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 588 - 645
Target Start/End: Original strand, 46669 - 46727
Alignment:
Q  588 ttttttgagtaccatgtaaattaaatacaatgtaatttttt-aatatatattattataa 645  Q
    ||||||||||||  |||||||| ||||||||||||||||||  ||||||||||||||||    
T  46669 ttttttgagtacattgtaaattgaatacaatgtaattttttggatatatattattataa 46727  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 644
Target Start/End: Complemental strand, 675606 - 675549
Alignment:
Q  588 ttttttgagtaccatgtaaattaaatacaatgtaat-tttttaatatatattattata 644  Q
    ||||||||||||  |||||||| ||||||||||||| ||||  |||||||||||||||    
T  675606 ttttttgagtacattgtaaattgaatacaatgtaatattttggatatatattattata 675549  T

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