View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1301_low_11 (Length: 332)
Name: NF1301_low_11
Description: NF1301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1301_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 76 - 281
Target Start/End: Original strand, 46356589 - 46356794
Alignment:
| Q |
76 |
aagggtatcgttttattacgtctttggctttgctgcatacgtggtcacgtttcaaaatcacatgcgtagcaataaatcaaattaaaattttatgtgacat |
175 |
Q |
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| T |
46356589 |
aagggtatcgttttattacgtctttggctttgctgcatacgtggtcacgtttcaaaatcacatgcgtagcaataaatcaaattaaaattttatgtgacat |
46356688 |
T |
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| Q |
176 |
tggatccaagctaatgtcataaattaatgatgaatttcaacaaagcagggacagtttctaacgtttctcacagcttcttttaacaagttatcaatatatt |
275 |
Q |
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| T |
46356689 |
tggatccaagctaatgtcataaattaatgatgaatttcaacaaagcagggacagtttctaacgtttctcacagcttcttttaacaagttatcaatatatt |
46356788 |
T |
|
| Q |
276 |
attgga |
281 |
Q |
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|||||| |
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| T |
46356789 |
attgga |
46356794 |
T |
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