View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1301_low_14 (Length: 262)
Name: NF1301_low_14
Description: NF1301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1301_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 1328326 - 1328095
Alignment:
| Q |
3 |
tctactagaagctgaaaattctagcttcaaaaattcacggtaaaatgacatgctaaacgtatgtctaacactacaaaagctaaaccaaacacatacaaaa |
102 |
Q |
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| T |
1328326 |
tctactagaagctgaaaattctagcttcacaaattcacggtaaaatgacatgctaaacgtatgtctaacactagaaaagctaaaccaaacgcatacaaaa |
1328227 |
T |
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| Q |
103 |
tcagcaaagaattccaattatcggtctactctatcacacgtgttaattgtgatttgcggtgtaatagtctaatccatgacatacatgtactcttatcctt |
202 |
Q |
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| T |
1328226 |
tcagcaaagaattccaattatcggtctactctatcacacgtgttaattgtgatttgcggtgtaatagtctaatccatgacatacatgtactcttatcctt |
1328127 |
T |
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| Q |
203 |
aaacttgtgcagttaataataaatttaaatgt |
234 |
Q |
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| T |
1328126 |
aaacttgtgcagttaataataaatttaaatgt |
1328095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 44187079 - 44186973
Alignment:
| Q |
110 |
agaattccaattatcggtctactctatcacacgtgttaattgtgatttgcggtgtaatagtctaatccatgacatacatgtactcttatccttaaacttg |
209 |
Q |
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| T |
44187079 |
agaattccaattatcgatttactctatcgcacgtgttaattgcgatttggggtataatagtcaaattcatgacatacatgta-tcttatccttaaaattg |
44186981 |
T |
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| Q |
210 |
tgcagtta |
217 |
Q |
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| T |
44186980 |
cgcagtta |
44186973 |
T |
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