View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1301_low_16 (Length: 251)
Name: NF1301_low_16
Description: NF1301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1301_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 14490258 - 14490504
Alignment:
| Q |
1 |
ttatgaaaattcacgcactgtaactgttttaagtagtaactttcagaatttcatgtttcttttgaaaatctctctcaaacctaaacatgtcaaaaacatc |
100 |
Q |
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| T |
14490258 |
ttatgaaaattcacgcactgtaactgttttaagtagtaactttcagaatttcatgtttcttttgaaaatctctctcaaacctaaacaagtcaaaaacatc |
14490357 |
T |
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| Q |
101 |
atacaacaaatcatttatcattaacaaattattccacccaattaaagatcaatacaagagattttccttcaaaatcatataacacaaaagaatcataaaa |
200 |
Q |
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| T |
14490358 |
atacaacaaatcatttatcattaacaaattattccacccaattaaagatcaatacaagagattttccttcaaaatcatataacacaaaagaatcataaaa |
14490457 |
T |
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| Q |
201 |
ataaggcatgtccatataattctactctctcactattcatatcactc |
247 |
Q |
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| T |
14490458 |
ataaggcatgtccatataattctactctctcactattcttattactc |
14490504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 44510467 - 44510405
Alignment:
| Q |
133 |
tccacccaattaaagatcaatacaagagattttccttcaaaatcatataacacaaaagaatca |
195 |
Q |
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| T |
44510467 |
tccacccaattgaagatcaacacaagagatttcccttcaaaatcatataacacagtagaatca |
44510405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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