View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1301_low_18 (Length: 245)

Name: NF1301_low_18
Description: NF1301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1301_low_18
NF1301_low_18
[»] chr8 (4 HSPs)
chr8 (1-124)||(19926136-19926259)
chr8 (32-118)||(14293936-14294022)
chr8 (90-121)||(3119810-3119841)
chr8 (175-207)||(19728103-19728135)
[»] chr3 (14 HSPs)
chr3 (125-229)||(9586936-9587040)
chr3 (170-229)||(783577-783636)
chr3 (175-229)||(1438228-1438282)
chr3 (177-211)||(13526841-13526875)
chr3 (170-216)||(43992198-43992244)
chr3 (175-208)||(1936773-1936806)
chr3 (175-216)||(9584878-9584919)
chr3 (170-210)||(771269-771309)
chr3 (183-211)||(1889382-1889410)
chr3 (183-211)||(1897461-1897489)
chr3 (183-211)||(1906907-1906935)
chr3 (183-211)||(2932151-2932179)
chr3 (184-216)||(12218279-12218311)
chr3 (176-220)||(37753114-37753158)
[»] chr5 (3 HSPs)
chr5 (1-113)||(8783996-8784108)
chr5 (1-120)||(4919811-4919927)
chr5 (175-216)||(23644652-23644693)
[»] chr1 (4 HSPs)
chr1 (1-120)||(46615542-46615650)
chr1 (174-205)||(51762698-51762729)
chr1 (176-206)||(23898456-23898486)
chr1 (176-214)||(24513300-24513338)
[»] chr4 (2 HSPs)
chr4 (7-120)||(45662548-45662661)
chr4 (175-208)||(27471385-27471418)
[»] scaffold0219 (1 HSPs)
scaffold0219 (1-109)||(9007-9114)
[»] chr6 (2 HSPs)
chr6 (2-120)||(6862647-6862765)
chr6 (181-216)||(9819614-9819649)
[»] scaffold0044 (1 HSPs)
scaffold0044 (176-211)||(89387-89422)
[»] chr2 (1 HSPs)
chr2 (170-218)||(33026898-33026946)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 19926259 - 19926136
Alignment:
Q  1 aagtgtggtgcaatgtttatatttgaggggattcaacatgagaaaaacataataatttgaatgtaaaattaagaattgaggaggttcacttgaaccccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19926259 aagtgtggtgcaatgtttatatttgaggggattcaacatgagaaaaacataataatttgaatgtaaaattaagaattgaggaggttcacttgaaccccct 19926160  T
Q  101 gagctctatgtagctccgccaatg 124  Q
    ||||||||||||||||||||||||    
T  19926159 gagctctatgtagctccgccaatg 19926136  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 14294022 - 14293936
Alignment:
Q  32 ttcaacatgagaaaaacataataatttgaatgtaaaattaagaattgaggaggttcacttgaaccccctgagctctatgtagctccg 118  Q
    |||||| ||||| ||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||| | || ||||||| ||||    
T  14294022 ttcaacgtgagataaacacaataaattgaatgtaaaattatgaattgaggatgttcactttaaccccctaacctttatgtagatccg 14293936  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 121
Target Start/End: Original strand, 3119810 - 3119841
Alignment:
Q  90 ttgaaccccctgagctctatgtagctccgcca 121  Q
    ||||||||||||||||||||||||||||||||    
T  3119810 ttgaaccccctgagctctatgtagctccgcca 3119841  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 19728103 - 19728135
Alignment:
Q  175 gaagtctacgttgagagtttgatatcaccttgt 207  Q
    ||||||| |||||||||||||||||||||||||    
T  19728103 gaagtctgcgttgagagtttgatatcaccttgt 19728135  T

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Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 9587040 - 9586936
Alignment:
Q  125 cttttaatatacctgagtttcaacatattagtagcagttacttgaacccggaagtctacgttgagagtttgatatcaccttgttcttgatgtcaagttga 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||     
T  9587040 cttttaatatacctgagtttcaacatattagtagcagttacttgaacccggaagtctacattgagagtttgatatcaccttattcttgatgtcaagttgt 9586941  T
Q  225 tgatg 229  Q
    |||||    
T  9586940 tgatg 9586936  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 783636 - 783577
Alignment:
Q  170 acccggaagtctacgttgagagtttgatatcaccttgttcttgatgtcaagttgatgatg 229  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  783636 acccggaagtctacgttgagagtttgatatcaccttgttcttaatgtcaagatgttgatg 783577  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 1438228 - 1438282
Alignment:
Q  175 gaagtctacgttgagagtttgatatcaccttgttcttgatgtcaagttgatgatg 229  Q
    |||||||||||||||||||||||||||||||||| || |||||||| || |||||    
T  1438228 gaagtctacgttgagagtttgatatcaccttgtttttaatgtcaagatgttgatg 1438282  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 13526841 - 13526875
Alignment:
Q  177 agtctacgttgagagtttgatatcaccttgttctt 211  Q
    |||||||||||||||||||||||||||||||||||    
T  13526841 agtctacgttgagagtttgatatcaccttgttctt 13526875  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 43992198 - 43992244
Alignment:
Q  170 acccggaagtctacgttgagagtttgatatcaccttgttcttgatgt 216  Q
    |||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  43992198 accctgaagtttacgttgagagtttgatatcaccttgttcttaatgt 43992244  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 1936806 - 1936773
Alignment:
Q  175 gaagtctacgttgagagtttgatatcaccttgtt 208  Q
    ||||||| ||||||||||||||||||||||||||    
T  1936806 gaagtctgcgttgagagtttgatatcaccttgtt 1936773  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 9584919 - 9584878
Alignment:
Q  175 gaagtctacgttgagagtttgatatcaccttgttcttgatgt 216  Q
    |||||||| || ||||||||||||||||||||| ||||||||    
T  9584919 gaagtctatgtcgagagtttgatatcaccttgtccttgatgt 9584878  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 771309 - 771269
Alignment:
Q  170 acccggaagtctacgttgagagtttgatatcaccttgttct 210  Q
    |||| ||||||||| | ||||||||||||||||||||||||    
T  771309 acccagaagtctacatagagagtttgatatcaccttgttct 771269  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 1889410 - 1889382
Alignment:
Q  183 cgttgagagtttgatatcaccttgttctt 211  Q
    |||||||||||||||||||||||||||||    
T  1889410 cgttgagagtttgatatcaccttgttctt 1889382  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 1897489 - 1897461
Alignment:
Q  183 cgttgagagtttgatatcaccttgttctt 211  Q
    |||||||||||||||||||||||||||||    
T  1897489 cgttgagagtttgatatcaccttgttctt 1897461  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 1906935 - 1906907
Alignment:
Q  183 cgttgagagtttgatatcaccttgttctt 211  Q
    |||||||||||||||||||||||||||||    
T  1906935 cgttgagagtttgatatcaccttgttctt 1906907  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 2932151 - 2932179
Alignment:
Q  183 cgttgagagtttgatatcaccttgttctt 211  Q
    |||||||||||||||||||||||||||||    
T  2932151 cgttgagagtttgatatcaccttgttctt 2932179  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 12218279 - 12218311
Alignment:
Q  184 gttgagagtttgatatcaccttgttcttgatgt 216  Q
    |||||||||||||||||||||||||||| ||||    
T  12218279 gttgagagtttgatatcaccttgttcttaatgt 12218311  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 37753158 - 37753114
Alignment:
Q  176 aagtctacgttgagagtttgatatcaccttgttcttgatgtcaag 220  Q
    ||||||||  ||||||| |||||||||||||||||| ||||||||    
T  37753158 aagtctacactgagagtctgatatcaccttgttcttaatgtcaag 37753114  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 8784108 - 8783996
Alignment:
Q  1 aagtgtggtgcaatgtttatatttgaggggattcaacatgagaaaaacataataatttgaatgtaaaattaagaattgaggaggttcacttgaaccccct 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| | ||||||| ||| ||||    
T  8784108 aagtgtggtgcaatgtttacatttgaggggattcaacatgagaaaaacataacaatttgaatataaaattatgaattgaggtgtttcacttaaactccct 8784009  T
Q  101 gagctctatgtag 113  Q
     | ||||||||||    
T  8784008 caactctatgtag 8783996  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 4919811 - 4919927
Alignment:
Q  1 aagtgtggtgcaatgtttatatttgaggggattcaacatgagaaaaacataataatttgaatgtaaaattaagaattgaggaggttcacttgaaccccct 100  Q
    ||||||||||||||||||| |||| | ||| |||||||||||||||||||||||| || ||| |||||||||||||||||| | ||||||||||  ||||    
T  4919811 aagtgtggtgcaatgtttagattttaaggggttcaacatgagaaaaacataataaatt-aatataaaattaagaattgaggggattcacttgaa--ccct 4919907  T
Q  101 gagctctatgtagctccgcc 120  Q
    || |||||||||| ||||||    
T  4919908 gacctctatgtaggtccgcc 4919927  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 23644652 - 23644693
Alignment:
Q  175 gaagtctacgttgagagtttgatatcaccttgttcttgatgt 216  Q
    ||||||| |||||| |||||||||||||||||||||| ||||    
T  23644652 gaagtctgcgttgaaagtttgatatcaccttgttcttaatgt 23644693  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 46615650 - 46615542
Alignment:
Q  1 aagtgtggtgcaatgtttatatttgaggggattcaacatgagaaaaacataataatttgaatgtaaaattaagaattgaggaggttcacttgaaccccct 100  Q
    |||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||| ||| ||||||||||| |     
T  46615650 aagtgtggtgcaatgtttatatttgaggggattcaacatga-----------taatttgaatgtaaaattaagaattgagggggtgcacttgaaccctcc 46615562  T
Q  101 gagctctatgtagctccgcc 120  Q
    ||||||||||||||||||||    
T  46615561 gagctctatgtagctccgcc 46615542  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 205
Target Start/End: Complemental strand, 51762729 - 51762698
Alignment:
Q  174 ggaagtctacgttgagagtttgatatcacctt 205  Q
    ||||||||||||||||||||||||||||||||    
T  51762729 ggaagtctacgttgagagtttgatatcacctt 51762698  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 23898486 - 23898456
Alignment:
Q  176 aagtctacgttgagagtttgatatcaccttg 206  Q
    |||||||||||||||||||||||||||||||    
T  23898486 aagtctacgttgagagtttgatatcaccttg 23898456  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 24513300 - 24513338
Alignment:
Q  176 aagtctacgttgagagtttgatatcaccttgttcttgat 214  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  24513300 aagtctacgttgaaagtttgatatcaccttgatcttgat 24513338  T

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Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 45662661 - 45662548
Alignment:
Q  7 ggtgcaatgtttatatttgaggggattcaacatgagaaaaacataataatttgaatgtaaaattaagaattgaggaggttcacttgaaccccctgagctc 106  Q
    ||||||||||||| |||||||||| |||||||||  |||| | ||| | |||||||||||| ||||||| ||||| ||||||||||||| |||||| |||    
T  45662661 ggtgcaatgtttagatttgagggggttcaacatggaaaaagcctaacattttgaatgtaaatttaagaagtgagggggttcacttgaacaccctgaactc 45662562  T
Q  107 tatgtagctccgcc 120  Q
    ||||||||||||||    
T  45662561 tatgtagctccgcc 45662548  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 27471418 - 27471385
Alignment:
Q  175 gaagtctacgttgagagtttgatatcaccttgtt 208  Q
    ||||||||||||||||||||| ||||||||||||    
T  27471418 gaagtctacgttgagagtttggtatcaccttgtt 27471385  T

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Target: scaffold0219 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 9114 - 9007
Alignment:
Q  1 aagtgtggtgcaatgtttatatttgaggggattcaacatgagaaaaacataataatttgaatgtaaaattaagaattgaggaggttcacttgaaccccct 100  Q
    |||| ||||||||||||||  |||||||||||| | |||||  |||||||||||||||| ||||||| ||||||||| ||| |||||| ||||||  |||    
T  9114 aagtatggtgcaatgtttaattttgaggggatttatcatgatgaaaacataataatttgtatgtaaatttaagaattaagg-ggttcaattgaacaacct 9016  T
Q  101 gagctctat 109  Q
    |||||||||    
T  9015 gagctctat 9007  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 6862765 - 6862647
Alignment:
Q  2 agtgtggtgcaatgtttatatttgaggggattcaacatgagaaaaaca-taataatttgaatgtaaaattaagaattgaggaggttcacttgaaccccct 100  Q
    |||||||||||||||||| |||||||||| ||||  ||| |||||  | ||| | |||||||||||| ||||||| ||||| |||||||||| || |||     
T  6862765 agtgtggtgcaatgtttagatttgagggggttcagtatg-gaaaatgactaacattttgaatgtaaatttaagaagtgagggggttcacttggacaccca 6862667  T
Q  101 gagctctatgtagctccgcc 120  Q
    || |||||||||||||||||    
T  6862666 gaactctatgtagctccgcc 6862647  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 9819649 - 9819614
Alignment:
Q  181 tacgttgagagtttgatatcaccttgttcttgatgt 216  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9819649 tacgttgagagtttgatatcaccttgttcttaatgt 9819614  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 89387 - 89422
Alignment:
Q  176 aagtctacgttgagagtttgatatcaccttgttctt 211  Q
    |||||||| |||||||||||||||||||||||||||    
T  89387 aagtctacattgagagtttgatatcaccttgttctt 89422  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 33026898 - 33026946
Alignment:
Q  170 acccggaagtctacgttgagagtttgatatcaccttgttcttgatgtca 218  Q
    |||| ||||||||| |||| ||| |||||||||||||||||| ||||||    
T  33026898 acccagaagtctacattgaaagtctgatatcaccttgttcttaatgtca 33026946  T

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