View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1301_low_2 (Length: 619)
Name: NF1301_low_2
Description: NF1301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1301_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 29 - 608
Target Start/End: Original strand, 32507846 - 32508430
Alignment:
| Q |
29 |
agttaccttttggcttggcctctgctttaaggtaatg---tgttgcttacaatcattgaggaaactaaaacactggcttgacattgttcatcatggtttg |
125 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32507846 |
agttaccttttggcttggcctctgctttaaggtaatgatgtgttgcttacaatcattgaggaaactaaaacactggcttgacattgttcatcatggtttg |
32507945 |
T |
|
| Q |
126 |
acttgnnnnnnnnccaggccttgtcattatcatataaatcgtgtatttgtaagcacattttagttgaagccttattttcaataatttcatatcctttatt |
225 |
Q |
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||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32507946 |
actggttttttttccaggccttgtcattatcatataaatcgtgtatttgtaagcacattttagttgaagccttattttcaataatttcatatcctttatt |
32508045 |
T |
|
| Q |
226 |
acacttggtgaggattgtgcatcattagattcattacatttggtgaaccttctgtattttatggtatacttattcnnnnnnn-cctccaaactttagttt |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32508046 |
acacttggtgaggattgtgcatcattagattcattacatttggtgaaccttctgtattttatggtatacttattcttttttttcctccaaactttagttt |
32508145 |
T |
|
| Q |
325 |
gaattttattagaagacaaatcaatggtgtgactgtgactcatgatttagctagagcaacacaatttatacctagtcgtcatattttatccatgcaccct |
424 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32508146 |
gaatttcattagaagacaaatcaatggtgtgactgtgactcatgatttagctagagcaacacaatttatacctagtcctcatattttatccatgcaccct |
32508245 |
T |
|
| Q |
425 |
cttgtattgctaacttcattattaataaaatcaaaatgcaacaagctctatgacatattgatcataacaatgattggtgatcaaacagataaagtgcgga |
524 |
Q |
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| T |
32508246 |
cttgtattgctaacttcattattaataaaatcaaaatgcaacaagctctatgacatattgatcataacaatgattggtgatcaaacagataaagtgcgga |
32508345 |
T |
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| Q |
525 |
gtgtgcatgaaattctagaaccaattaaacaatcctttagtaaaaataa-ttcgcaaacttaatgcttgacacctaaatattcat |
608 |
Q |
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| T |
32508346 |
gtgtgcatgaaattctagaaccaattaaacaatcctttagtaaaaataatttcacaaacttaatgcttgacacctaaatattcat |
32508430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 312 - 455
Target Start/End: Original strand, 21903106 - 21903245
Alignment:
| Q |
312 |
caaactttagtttgaattttattagaagacaaatcaatggtgtgactgtgactcatgatttagctagagcaacacaatttatacctagtcgtcatatttt |
411 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||| |||| | ||||||||| |
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| T |
21903106 |
caaactttagtttgaatttcattagaagacaaatcaatggtgtgtc----actcatgatttagctatagcaacacaatttatagctaggcctcatatttt |
21903201 |
T |
|
| Q |
412 |
atccatgcaccctcttgtattgctaacttcattattaataaaat |
455 |
Q |
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| T |
21903202 |
atccatgcaccctcttgtattgctcactttattattaataaaat |
21903245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 470 - 575
Target Start/End: Original strand, 32512844 - 32512949
Alignment:
| Q |
470 |
ctctatgacatattgatcataacaatgattggtgatcaaacagataaagtgcggagtgtgcatgaaattctagaaccaattaaacaatcctttagtaaaa |
569 |
Q |
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|||||||| ||||||||| |||||| ||| ||| ||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| || |
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| T |
32512844 |
ctctatgaaatattgatcttaacaaggatgggttatcaaacagataaagtgagtagcatgcatgaaattctagaaccaattaaacaatcctttagtacaa |
32512943 |
T |
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| Q |
570 |
ataatt |
575 |
Q |
| |
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||||| |
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| T |
32512944 |
ttaatt |
32512949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 514 - 608
Target Start/End: Original strand, 21903352 - 21903447
Alignment:
| Q |
514 |
taaagtgcggagtgtgcatgaaattctagaaccaattaaacaatcctttagtaaaaataa-ttcgcaaacttaatgcttgacacctaaatattcat |
608 |
Q |
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||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||||| ||| || ||| ||||||||||||| ||||||||| |
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| T |
21903352 |
taaagtgaggagcgtgtatgaaattctagaaccaattaaacaatcctttagtacaaataatttcataagctttatgcttgacacctgaatattcat |
21903447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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