View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1301_low_3 (Length: 496)

Name: NF1301_low_3
Description: NF1301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1301_low_3
NF1301_low_3
[»] chr4 (37 HSPs)
chr4 (1-208)||(37781627-37781835)
chr4 (278-467)||(34670463-34670650)
chr4 (274-418)||(37781970-37782114)
chr4 (75-208)||(4956027-4956157)
chr4 (89-208)||(10047233-10047351)
chr4 (89-208)||(5269316-5269437)
chr4 (89-208)||(16630806-16630923)
chr4 (89-208)||(25862147-25862265)
chr4 (381-467)||(873316-873401)
chr4 (105-208)||(18377241-18377344)
chr4 (89-198)||(16624144-16624252)
chr4 (135-208)||(34670788-34670863)
chr4 (136-208)||(873641-873713)
chr4 (152-208)||(38152564-38152619)
chr4 (89-208)||(54867036-54867156)
chr4 (294-463)||(5112365-5112530)
chr4 (89-208)||(5143113-5143231)
chr4 (89-208)||(39245847-39245966)
chr4 (145-208)||(42599699-42599762)
chr4 (102-208)||(3777417-3777521)
chr4 (157-203)||(3991945-3991991)
chr4 (89-208)||(24333664-24333781)
chr4 (89-202)||(1983429-1983542)
chr4 (371-466)||(16623094-16623186)
chr4 (371-466)||(16628673-16628765)
chr4 (275-351)||(18912276-18912351)
chr4 (89-208)||(5147531-5147649)
chr4 (89-223)||(31985743-31985876)
chr4 (79-185)||(3677684-3677787)
chr4 (92-208)||(8114860-8114973)
chr4 (371-412)||(10047585-10047626)
chr4 (371-412)||(24334015-24334056)
chr4 (371-412)||(28468388-28468429)
chr4 (371-412)||(31985485-31985526)
chr4 (278-314)||(5871832-5871867)
chr4 (278-306)||(6542300-6542328)
chr4 (278-314)||(24969124-24969159)
[»] chr3 (54 HSPs)
chr3 (278-466)||(5366110-5366299)
chr3 (78-235)||(21156272-21156429)
chr3 (274-463)||(29100268-29100459)
chr3 (80-208)||(27038135-27038261)
chr3 (283-412)||(3328198-3328326)
chr3 (89-208)||(8370603-8370720)
chr3 (89-208)||(27026799-27026916)
chr3 (89-208)||(30709907-30710024)
chr3 (89-208)||(48438068-48438186)
chr3 (103-208)||(25516848-25516953)
chr3 (278-358)||(21353674-21353753)
chr3 (371-470)||(33386461-33386557)
chr3 (89-189)||(36028959-36029058)
chr3 (85-208)||(16264199-16264320)
chr3 (89-208)||(40592898-40593016)
chr3 (283-466)||(1417281-1417460)
chr3 (135-208)||(26298888-26298960)
chr3 (92-208)||(27986561-27986675)
chr3 (270-329)||(4386851-4386911)
chr3 (91-205)||(29100026-29100137)
chr3 (283-412)||(8126748-8126875)
chr3 (284-412)||(18552726-18552851)
chr3 (154-208)||(25929557-25929611)
chr3 (82-208)||(34482048-34482173)
chr3 (284-466)||(40592572-40592750)
chr3 (270-330)||(25517085-25517146)
chr3 (434-467)||(25517446-25517479)
chr3 (371-467)||(27986245-27986338)
chr3 (152-208)||(3328471-3328527)
chr3 (89-223)||(1309709-1309841)
chr3 (279-358)||(21156542-21156620)
chr3 (89-223)||(32143176-32143308)
chr3 (152-195)||(35925398-35925441)
chr3 (283-411)||(25795899-25796024)
chr3 (278-312)||(29196507-29196541)
chr3 (285-412)||(35925599-35925723)
chr3 (284-412)||(36029212-36029338)
chr3 (283-325)||(37466408-37466450)
chr3 (371-412)||(1306154-1306195)
chr3 (371-412)||(1736145-1736186)
chr3 (371-412)||(3715843-3715884)
chr3 (371-412)||(16264553-16264594)
chr3 (160-209)||(18552997-18553046)
chr3 (371-412)||(27453164-27453205)
chr3 (371-412)||(27974793-27974834)
chr3 (371-412)||(32143527-32143568)
chr3 (371-412)||(39032395-39032436)
chr3 (371-412)||(47923745-47923786)
chr3 (89-208)||(1417605-1417722)
chr3 (89-208)||(3716117-3716236)
chr3 (278-314)||(9666587-9666623)
chr3 (290-322)||(37387542-37387574)
chr3 (89-208)||(39040109-39040224)
chr3 (152-188)||(47924007-47924043)
[»] chr2 (49 HSPs)
chr2 (278-452)||(18674213-18674386)
chr2 (92-208)||(2869819-2869938)
chr2 (270-467)||(28770572-28770768)
chr2 (48-235)||(16388568-16388757)
chr2 (135-214)||(28770893-28770972)
chr2 (376-466)||(12632890-12632980)
chr2 (136-208)||(3277903-3277975)
chr2 (89-208)||(23078597-23078715)
chr2 (144-208)||(5699694-5699758)
chr2 (89-208)||(33528746-33528864)
chr2 (89-208)||(34388713-34388830)
chr2 (270-357)||(2869599-2869687)
chr2 (284-466)||(3278118-3278297)
chr2 (89-208)||(8039913-8040032)
chr2 (89-208)||(10445569-10445689)
chr2 (89-208)||(10707377-10707496)
chr2 (278-354)||(15903800-15903875)
chr2 (89-195)||(27149002-27149109)
chr2 (89-208)||(31055896-31056014)
chr2 (135-208)||(18674525-18674598)
chr2 (89-209)||(17865057-17865176)
chr2 (89-208)||(20522074-20522192)
chr2 (92-202)||(40014785-40014893)
chr2 (284-412)||(14698861-14698986)
chr2 (135-208)||(8390275-8390347)
chr2 (386-466)||(41586351-41586429)
chr2 (278-412)||(2837881-2838015)
chr2 (135-203)||(12632456-12632524)
chr2 (89-209)||(13569182-13569301)
chr2 (79-187)||(16388291-16388399)
chr2 (89-208)||(16940334-16940452)
chr2 (89-208)||(17010999-17011117)
chr2 (89-199)||(14699128-14699241)
chr2 (89-208)||(33117990-33118108)
chr2 (89-208)||(42039796-42039912)
chr2 (138-208)||(39532835-39532905)
chr2 (371-412)||(23078323-23078364)
chr2 (135-208)||(39482830-39482903)
chr2 (371-466)||(36757563-36757655)
chr2 (89-208)||(36757889-36758004)
chr2 (60-119)||(28770997-28771056)
chr2 (284-412)||(34388969-34389096)
chr2 (157-208)||(34393347-34393398)
chr2 (89-195)||(34682472-34682578)
chr2 (371-412)||(8040268-8040309)
chr2 (371-412)||(10445319-10445360)
chr2 (371-412)||(21630149-21630190)
chr2 (278-314)||(1631853-1631888)
chr2 (283-351)||(35397628-35397694)
[»] chr5 (36 HSPs)
chr5 (79-208)||(34842448-34842576)
chr5 (75-207)||(30899697-30899832)
chr5 (78-235)||(5610985-5611142)
chr5 (274-467)||(2630339-2630530)
chr5 (284-466)||(31300396-31300574)
chr5 (89-208)||(14520083-14520200)
chr5 (283-412)||(28832374-28832502)
chr5 (270-350)||(33030854-33030934)
chr5 (89-208)||(3880156-3880272)
chr5 (275-354)||(6741961-6742039)
chr5 (294-412)||(11181684-11181800)
chr5 (89-208)||(28832114-28832231)
chr5 (89-208)||(17004085-17004203)
chr5 (89-208)||(19588600-19588718)
chr5 (279-353)||(3651613-3651686)
chr5 (283-408)||(42127266-42127390)
chr5 (396-463)||(3325821-3325885)
chr5 (152-208)||(12084302-12084357)
chr5 (90-208)||(24553631-24553748)
chr5 (135-208)||(2630130-2630203)
chr5 (371-466)||(30900070-30900161)
chr5 (279-358)||(5611255-5611333)
chr5 (89-208)||(9353458-9353573)
chr5 (284-412)||(10281870-10281997)
chr5 (284-412)||(17003811-17003938)
chr5 (371-412)||(9353184-9353225)
chr5 (371-412)||(11916824-11916865)
chr5 (275-312)||(31182986-31183022)
chr5 (371-412)||(36932200-36932241)
chr5 (371-412)||(38219604-38219645)
chr5 (160-208)||(11181957-11182005)
chr5 (275-314)||(19806395-19806432)
chr5 (278-314)||(33831692-33831727)
chr5 (278-322)||(34842715-34842759)
chr5 (89-208)||(36932476-36932593)
chr5 (89-208)||(42127535-42127652)
[»] scaffold0002 (2 HSPs)
scaffold0002 (270-464)||(14785-14979)
scaffold0002 (144-208)||(14593-14657)
[»] chr1 (46 HSPs)
chr1 (274-467)||(25116498-25116690)
chr1 (89-208)||(29651664-29651783)
chr1 (278-470)||(8281430-8281620)
chr1 (148-209)||(48382606-48382667)
chr1 (283-466)||(47098626-47098804)
chr1 (283-466)||(47102640-47102821)
chr1 (283-412)||(19073046-19073173)
chr1 (283-412)||(19120936-19121063)
chr1 (89-208)||(40816857-40816976)
chr1 (91-202)||(32737127-32737236)
chr1 (284-466)||(32889558-32889734)
chr1 (89-208)||(775526-775644)
chr1 (89-208)||(21536696-21536812)
chr1 (89-208)||(13598250-13598370)
chr1 (280-354)||(17345429-17345502)
chr1 (270-358)||(35109443-35109531)
chr1 (152-208)||(27104497-27104553)
chr1 (85-208)||(47102966-47103087)
chr1 (89-208)||(47704061-47704181)
chr1 (89-208)||(16124642-16124760)
chr1 (283-358)||(32736902-32736976)
chr1 (90-208)||(19072781-19072899)
chr1 (90-208)||(19120671-19120789)
chr1 (48-208)||(8281135-8281289)
chr1 (274-315)||(11032268-11032309)
chr1 (275-315)||(918428-918468)
chr1 (144-208)||(9023957-9024021)
chr1 (144-208)||(10996862-10996926)
chr1 (283-412)||(40816668-40816793)
chr1 (152-208)||(47098949-47099005)
chr1 (275-358)||(3019839-3019921)
chr1 (89-208)||(26645024-26645140)
chr1 (304-419)||(11031320-11031433)
chr1 (278-412)||(22819541-22819676)
chr1 (371-412)||(3281911-3281952)
chr1 (281-330)||(10997071-10997120)
chr1 (381-467)||(10997173-10997263)
chr1 (371-412)||(13598604-13598645)
chr1 (371-412)||(13604474-13604515)
chr1 (371-412)||(16124366-16124407)
chr1 (371-412)||(19358693-19358734)
chr1 (371-412)||(19361282-19361323)
chr1 (371-412)||(19366158-19366199)
chr1 (371-412)||(19379922-19379963)
chr1 (371-412)||(29652017-29652058)
chr1 (144-205)||(35109663-35109724)
[»] chr7 (38 HSPs)
chr7 (283-466)||(23402814-23402993)
chr7 (89-224)||(28617334-28617471)
chr7 (283-466)||(20284206-20284385)
chr7 (278-412)||(5817122-5817255)
chr7 (284-412)||(9185026-9185153)
chr7 (284-412)||(9189859-9189986)
chr7 (89-208)||(20283943-20284061)
chr7 (284-412)||(2580508-2580635)
chr7 (89-208)||(9185288-9185406)
chr7 (89-208)||(9190133-9190251)
chr7 (89-208)||(9235680-9235800)
chr7 (89-208)||(2647821-2647940)
chr7 (89-208)||(46516435-46516554)
chr7 (89-208)||(49091516-49091633)
chr7 (89-208)||(4796792-4796913)
chr7 (400-470)||(27984678-27984747)
chr7 (135-208)||(29159703-29159775)
chr7 (371-466)||(46516106-46516198)
chr7 (89-208)||(21988760-21988879)
chr7 (283-412)||(9235434-9235562)
chr7 (284-412)||(29159922-29160050)
chr7 (278-402)||(3047367-3047489)
chr7 (152-208)||(55864-55919)
chr7 (89-208)||(2479193-2479308)
chr7 (89-208)||(23403138-23403256)
chr7 (278-312)||(24526017-24526051)
chr7 (270-315)||(28617173-28617219)
chr7 (371-412)||(56153-56194)
chr7 (371-412)||(2479540-2479581)
chr7 (276-333)||(4162699-4162756)
chr7 (371-412)||(4796520-4796561)
chr7 (371-412)||(21640014-21640055)
chr7 (371-412)||(21646212-21646253)
chr7 (371-412)||(21983490-21983531)
chr7 (75-115)||(8140952-8140992)
chr7 (371-411)||(18413844-18413884)
chr7 (92-208)||(21983139-21983255)
chr7 (160-208)||(27984411-27984459)
[»] chr8 (30 HSPs)
chr8 (279-462)||(31513135-31513314)
chr8 (75-208)||(5990685-5990816)
chr8 (278-470)||(3051232-3051420)
chr8 (284-412)||(19752246-19752372)
chr8 (285-468)||(8863425-8863604)
chr8 (280-353)||(9054748-9054820)
chr8 (89-208)||(5702608-5702726)
chr8 (278-412)||(7493025-7493158)
chr8 (152-208)||(26403355-26403411)
chr8 (89-208)||(9765945-9766063)
chr8 (278-327)||(6813795-6813845)
chr8 (144-214)||(11771857-11771927)
chr8 (102-208)||(28307428-28307534)
chr8 (371-412)||(19175606-19175647)
chr8 (152-208)||(28387898-28387955)
chr8 (371-466)||(7412544-7412636)
chr8 (75-184)||(7493210-7493325)
chr8 (284-412)||(26403081-26403208)
chr8 (278-312)||(30291620-30291654)
chr8 (135-208)||(4696721-4696793)
chr8 (270-358)||(5990467-5990555)
chr8 (139-208)||(8863755-8863824)
chr8 (437-466)||(11712237-11712266)
chr8 (89-208)||(19752519-19752637)
chr8 (371-412)||(26288096-26288137)
chr8 (371-412)||(26301353-26301394)
chr8 (371-412)||(26313347-26313388)
chr8 (371-412)||(31071079-31071120)
chr8 (136-208)||(23799702-23799774)
chr8 (275-315)||(42093128-42093168)
[»] chr6 (35 HSPs)
chr6 (279-467)||(30517922-30518112)
chr6 (274-419)||(33721404-33721548)
chr6 (89-208)||(33721684-33721800)
chr6 (89-208)||(22963553-22963672)
chr6 (89-208)||(23824721-23824840)
chr6 (75-207)||(1115229-1115358)
chr6 (284-412)||(31936695-31936820)
chr6 (278-412)||(14521785-14521919)
chr6 (89-208)||(10077290-10077408)
chr6 (89-208)||(31979367-31979485)
chr6 (294-466)||(24435773-24435939)
chr6 (283-466)||(31979631-31979808)
chr6 (89-208)||(18232699-18232817)
chr6 (89-208)||(21355892-21356007)
chr6 (283-412)||(21801196-21801323)
chr6 (89-208)||(30519146-30519265)
chr6 (152-208)||(4629869-4629925)
chr6 (152-208)||(5017594-5017649)
chr6 (132-233)||(9036157-9036258)
chr6 (154-208)||(28301089-28301143)
chr6 (154-208)||(28510930-28510984)
chr6 (89-208)||(31936441-31936559)
chr6 (75-215)||(99000-99135)
chr6 (89-208)||(5757604-5757719)
chr6 (278-312)||(16569047-16569081)
chr6 (374-412)||(21356244-21356282)
chr6 (375-412)||(5572095-5572132)
chr6 (371-412)||(5757330-5757371)
chr6 (371-412)||(18233050-18233091)
chr6 (371-412)||(22963903-22963944)
chr6 (371-412)||(23824449-23824490)
chr6 (434-470)||(1114895-1114931)
chr6 (278-330)||(1115037-1115089)
chr6 (89-189)||(5572740-5572839)
chr6 (135-223)||(22708919-22709005)
[»] scaffold0016 (1 HSPs)
scaffold0016 (278-467)||(102292-102479)
[»] scaffold0076 (3 HSPs)
scaffold0076 (144-208)||(16114-16178)
scaffold0076 (75-121)||(16190-16236)
scaffold0076 (274-358)||(15895-15977)
[»] scaffold0148 (2 HSPs)
scaffold0148 (135-208)||(10628-10701)
scaffold0148 (371-412)||(10935-10976)
[»] scaffold0006 (4 HSPs)
scaffold0006 (89-208)||(2346-2464)
scaffold0006 (89-208)||(5535-5655)
scaffold0006 (371-412)||(5889-5930)
scaffold0006 (371-412)||(133131-133172)
[»] scaffold0140 (1 HSPs)
scaffold0140 (371-467)||(8217-8310)
[»] scaffold0184 (2 HSPs)
scaffold0184 (89-149)||(29673-29733)
scaffold0184 (166-202)||(29613-29649)
[»] scaffold0078 (2 HSPs)
scaffold0078 (89-149)||(43111-43171)
scaffold0078 (162-202)||(43191-43231)
[»] scaffold0036 (1 HSPs)
scaffold0036 (89-208)||(85539-85655)
[»] scaffold0087 (3 HSPs)
scaffold0087 (89-208)||(44087-44202)
scaffold0087 (371-412)||(36684-36725)
scaffold0087 (371-412)||(43813-43854)
[»] scaffold0098 (1 HSPs)
scaffold0098 (371-412)||(45402-45443)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 37781627 - 37781835
Alignment:
Q  1 gatttgtggaaaatcaagttcgttttatagataaaacaattcttggt-ttgtgaattcagacaaataattataataataaaacttagacgtgtggagcaa 99  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  37781627 gatttatgaaaaatcaagttcgttttatggataaaacaattcttggtgttgtgaattcaaacaaataattataataataaaacttagaagtgtggagcaa 37781726  T
Q  100 aagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaa 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37781727 aagaagtagtcattaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaa 37781826  T
Q  200 caaagataa 208  Q
    |||||||||    
T  37781827 caaagataa 37781835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 278 - 467
Target Start/End: Complemental strand, 34670650 - 34670463
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 377  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||  |||||| |||||||||||||||||||  |         |||||||    
T  34670650 ctcacaaagaacaaatcataatttctatccatttttcaagtcactcacactca-caatgaatcctaagagaaaacactaaagaaaacttttagatccttc 34670552  T
Q  378 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 467  Q
    |  |||||| || |||||||||||| || |||||||||||||||| ||||||||| |||||||||| ||| |||||| ||||||||||||    
T  34670551 ctctaatgagatctcactacccaagatgcttacaaatgtttctcaactcaagaaa-aaactctcactaaatacactctaccctaaagttc 34670463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 274 - 418
Target Start/End: Original strand, 37781970 - 37782114
Alignment:
Q  274 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 373  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||  |||||| |||||||| | ||||||||||||||||| ||         ||     
T  37781970 aaaactcacaaagaacaaatcttaatttctacccatttttcaagtcacctacactcgtaaatgaatcttaagagaaaacactaaaagagactttttgatt 37782069  T
Q  374 cttccaataatgaaatttcactacccaaggtgtttacaaatgttt 418  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  37782070 cttccaataatgaaatctcactacccaaggtgtttacaaatgttt 37782114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 4956027 - 4956157
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagc 174  Q
    |||| ||||||||| ||||||||||| |||||| | ||||||||| || | | | |||| ||||||   |||||||  || |||||| ||||||||||||    
T  4956027 aatataacttagacatgtggagcaaaggaagtaataatcaatgagcaatgcagcctcaagcaacaa---caacaaacggatctagatttaagtgtgaagc 4956123  T
Q  175 aacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||||| |||| ||||||||||| ||||||    
T  4956124 aacaccacaaacataatcaaagcaacacagataa 4956157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 10047233 - 10047351
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || |||||||  |||||| ||  ||| ||| |||| ||| |||||||| |||||||||||||  |||||||||||||||||    
T  10047233 gtgtggagcaaaggaagtggtaatcaatggataaagtgtctccaagcaataacaacaa-aaatagacatagatctaagtgtagagcaacaccacaagcat 10047331  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  10047332 aatcaaagcaataaagataa 10047351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 5269437 - 5269316
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaa--tagacctagatctaagtgtgaagcaacaccacaagc 186  Q
    |||||||||||| ||||| || |||||||  |||||| ||  ||| |||||||| |||||||  || ||||||||||||||||  |||||||||||||||    
T  5269437 gtgtggagcaaaggaagtggtaatcaatggataaagtgtctccaagcaacaacaacaacaaaaatatacctagatctaagtgtagagcaacaccacaagc 5269338  T
Q  187 atattcaaagcaacaaagataa 208  Q
    ||| ||||||||| ||| ||||    
T  5269337 ataatcaaagcaataaatataa 5269316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 16630923 - 16630806
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||| | || ||||||| ||||||| ||  ||| || ||||| ||| ||| | |||||||||||||||| ||||||||||||||||||    
T  16630923 gtgtggagcaaaggaactggtaatcaatgtgtaaagtgtctccaagcagcaacaacaa-aaacaaacctagatctaagtgtaaagcaacaccacaagcat 16630825  T
Q  189 attcaaagcaacaaagataa 208  Q
    | |||||| |||||||||||    
T  16630824 aatcaaag-aacaaagataa 16630806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 25862265 - 25862147
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  25862265 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcat 25862167  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  25862166 aatcaaagcaataaagataa 25862147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 467
Target Start/End: Complemental strand, 873401 - 873316
Alignment:
Q  381 taatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 467  Q
    |||||| || ||||||| ||||||||||||||||||| | || | ||||||| ||| | ||||||||||||||||||||||||||||    
T  873401 taatgagatctcactactcaaggtgtttacaaatgttccccaacccaagaaa-aaattatcaccaaagacactcaaccctaaagttc 873316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 18377241 - 18377344
Alignment:
Q  105 gtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaag 204  Q
    ||||| |||||||  |||||| || |||| |||||||| ||||||| || |||| | |||||||| |||||  |||||||||||| |||||||||||||     
T  18377241 gtagtaatcaatggataaagtgtcctcaagcaacaacaacaacaaacagtcctaaaactaagtgtaaagcataaccacaagcataatcaaagcaacaaaa 18377340  T
Q  205 ataa 208  Q
    ||||    
T  18377341 ataa 18377344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 16624252 - 16624144
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| |||||  | ||||||| ||||||| ||  ||| |||||||| ||| ||| |||||||||| |||||||  |||||||||||||| ||    
T  16624252 gtgtggagcaaaggaagtgataatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctagatttaagtgtagagcaacaccacaagaat 16624154  T
Q  189 attcaaagca 198  Q
    | ||||||||    
T  16624153 aatcaaagca 16624144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 34670863 - 34670788
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaa----gtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||| ||||||||| ||||||||||||    |||||||||  ||||| ||||||||||||||||||||||||||    
T  34670863 caacaacaacaacaaatatacctagatctaattaagtgtgaagc--caccaaaagcatattcaaagcaacaaagataa 34670788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 873713 - 873641
Alignment:
Q  136 aacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||| |||||||  ||| || ||||||||||||| ||||||||||| |||||||||| |||| |||||||    
T  873713 aacaacaacaacaaactgacttaaatctaagtgtgaaacaacaccacaaacatattcaaaacaacgaagataa 873641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 38152619 - 38152564
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||||    
T  38152619 agacctagatctaagtgtatagcaacaccacaagcataatcaaagc-acaaagataa 38152564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 54867036 - 54867156
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaat-agacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| |||  |||| |||||||||||||  ||||||||||||||||    
T  54867036 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaaaaaaacagacatagatctaagtgtagagcaacaccacaagca 54867135  T
Q  188 tattcaaagcaacaaagataa 208  Q
    || |||||| || ||||||||    
T  54867136 taatcaaagtaataaagataa 54867156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 463
Target Start/End: Original strand, 5112365 - 5112530
Alignment:
Q  294 cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataatgaaatttca 393  Q
    |||||||| |||| |||||| | |||||||||||||| || |||| ||||||||||||||  ||| ||         |||||||||||  |||||| |||    
T  5112365 cctaatttgtacctattttttaagtcactcacactcacaa-tgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctca 5112463  T
Q  394 ctacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaa 463  Q
    ||||||||||||||||||| |||||| || | ||||| |  | ||| || ||||||||||||| ||||||    
T  5112464 ctacccaaggtgtttacaa-tgtttcccaacccaagaga--acctcacaacaaagacactcaaacctaaa 5112530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 5143113 - 5143231
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  | ||||||||||| |||    
T  5143113 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaaacaacaacaacaa-aaacagacctaaatctaagtgtagaacaacaccacaaacat 5143211  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||| ||| | ||||||    
T  5143212 aatcaaaacaatagagataa 5143231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 39245847 - 39245966
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||| || ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||| ||||    
T  39245847 gtgtggagcgaatgaagtggtaatcaatagataaagtgtctccaaacaacaacaacaaaaaacagacctaaatctaagtgtagagcaacaccacaggcat 39245946  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||| ||| ||||||||    
T  39245947 aatcaaaacaataaagataa 39245966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 42599762 - 42599699
Alignment:
Q  145 aacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||| | |||||||||||| |||  |||||||||||||||||| ||||||||| ||||||||    
T  42599762 aacaaacaaacctagatctaaatgtagagcaacaccacaagcataatcaaagcaataaagataa 42599699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 3777417 - 3777521
Alignment:
Q  102 gaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaaca 201  Q
    ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| ||||||||||||||||||  | ||| |||||||||||| ||||||| |||    
T  3777417 gaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctagatctaagtgtagaacaaaaccacaagcataatcaaagc-aca 3777514  T
Q  202 aagataa 208  Q
    |||||||    
T  3777515 aagataa 3777521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 3991945 - 3991991
Alignment:
Q  157 tagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaa 203  Q
    ||||||||||||||||||||||| ||||||||||| |||||| ||||    
T  3991945 tagatctaagtgtgaagcaacactacaagcatatttaaagcatcaaa 3991991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 24333664 - 24333781
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||||||||||||||  |||||   ||||||||    
T  24333664 gtgtggagcaaaaggaagtggtaatcaatagataaagtgtctccaaacaacaacaacaaaaaacagacctagatctaagtgtagagcaa---cacaagca 24333760  T
Q  188 tattcaaagcaacaaagataa 208  Q
    || ||||||||| ||||||||    
T  24333761 taatcaaagcaataaagataa 24333781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 1983542 - 1983429
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| |||||| | |||||||  ||||||    |||| |||||||| |||||||  ||| || |||||||||| ||||| |||||||| |||    
T  1983542 gtgtggagcaaaggaagtaataatcaatggataaagtgggttcaagcaacaacaacaacaaactgacttaaatctaagtgtaaagcatcaccacaaacat 1983443  T
Q  189 attcaaagcaacaa 202  Q
    | ||||| ||||||    
T  1983442 aatcaaaacaacaa 1983429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 466
Target Start/End: Complemental strand, 16623186 - 16623094
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  16623186 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 16623094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 466
Target Start/End: Complemental strand, 16628765 - 16628673
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  16628765 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 16628673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 18912351 - 18912276
Alignment:
Q  275 aaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaa 351  Q
    |||||||||||||||||| ||||| || || |||||||||| |||||||| || ||  |||||| ||||||||||||    
T  18912351 aaactcacaaagaacaaaccctaaattatatccatttttcaagtcactcaaaccca-caatgaatcctaagagaaaa 18912276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 5147531 - 5147649
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  |||  ||||||| ||| ||  ||||||| ||||||||||  ||||||||||||| |||    
T  5147531 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagaaacaacaacaataac-agacctaaatctaagtgtagagcaacaccacaaacat 5147629  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||| ||| | ||||||    
T  5147630 aatcaaaacaatagagataa 5147649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 31985876 - 31985743
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||| ||||||| |||| || ||| ||| ||||||| ||  ||| |||||||| ||| ||| |||||||| |||| ||||  |||||| |||||||||    
T  31985876 gtgtggtgcaaaaggaagtggtaatctatgtgtaaagtgtctccaagcaacaacaacaaaaaacagacctag-tcta-gtgtagagcaactccacaagca 31985779  T
Q  188 tattcaaagcaacaaagataattaagagaggaagaa 223  Q
    ||| |||||||| ||||||||  |||| ||||||||    
T  31985778 tatacaaagcaataaagataagcaagaaaggaagaa 31985743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 3677787 - 3677684
Alignment:
Q  79 aaacttagacgtgtggagcaaaa-gaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaac 177  Q
    ||||||||| ||||||||||||| |||||||| | |||| |  |||||| | |||| |||||||| |||    |||||||| |||||||||||||||||     
T  3677787 aaacttagatgtgtggagcaaaacgaagtagtaaccaataatcaaagtagcttcaagcaacaacaacaa----tagacctatatctaagtgtgaagcaaa 3677692  T
Q  178 accacaag 185  Q
    | ||||||    
T  3677691 aacacaag 3677684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 8114973 - 8114860
Alignment:
Q  92 tggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatatt 191  Q
    ||||| |||||||||||| ||||||||  |||||| |||||| |||| |   ||| |||||||||||||||| | ||||||| ||||| | ||  |||||    
T  8114973 tggagtaaaagaagtagtaatcaatgaccaaagtaacatcaagcaacca---caataaatagacctagatctcaatgtgaagtaacacaataattatatt 8114877  T
Q  192 caaagcaacaaagataa 208  Q
     ||| ||||||| ||||    
T  8114876 taaaccaacaaaaataa 8114860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 10047585 - 10047626
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  10047585 atccttccaatggtgaaatctcactacccaaggtgtttacaa 10047626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 24334015 - 24334056
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  24334015 atccttccaatggtgaaatctcactacccaaggtgtttacaa 24334056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 28468429 - 28468388
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  28468429 atccttccaatggtgaaatctcactacccaaggtgtttacaa 28468388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 31985526 - 31985485
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||| ||  |||||||||||||||||||||||||||||    
T  31985526 atccttcccatggtgaaatttcactacccaaggtgtttacaa 31985485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 5871867 - 5871832
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttc 314  Q
    ||||||||||||||| |||||||||||||||||||||    
T  5871867 ctcacaaagaacaaa-cctaatttctacccatttttc 5871832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 6542300 - 6542328
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacc 306  Q
    |||||||||||||||||||||||||||||    
T  6542300 ctcacaaagaacaaatcctaatttctacc 6542328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 24969159 - 24969124
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttc 314  Q
    ||||||||||||||||| |||||||||||||||||||    
T  24969159 ctcacaaagaacaaatc-taatttctacccatttttc 24969124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 54)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 278 - 466
Target Start/End: Complemental strand, 5366299 - 5366110
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 377  Q
    ||||||| ||| ||||| |||||||||||| ||||||  ||||| |||||| ||||||||| |||||| |||||||||||| ||         |||||||    
T  5366299 ctcacaatgaaaaaatcttaatttctacccttttttctagtcacccacactaataaatgaatcctaagcgaaaacactaaaggaaacttttcgatccttc 5366200  T
Q  378 caataat-gaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
    |||| || ||||| | ||||||||||||||||||||||||||  || ||||||||||||||||||||||||||| |||||||||||||||    
T  5366199 caattattgaaatcttactacccaaggtgtttacaaatgttttccaactcaagaaataaactctcaccaaagactctcaaccctaaagtt 5366110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 21156272 - 21156429
Alignment:
Q  78 aaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaac 177  Q
    |||||||||  | ||| |||||| |||||||| ||||||||||||||||   | || |||||| |  |||||| | ||||||||||||| ||||| ||||    
T  21156272 aaaacttaggtgagtgaagcaaatgaagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaaacctagatctaagagtgaaacaac 21156371  T
Q  178 accacaagcatattcaaagcaacaaagataattaagagaggaagaaaccaacacacca 235  Q
    |||| ||| ||||||||||||||||||||||  ||||  |||||||| ||||||||||    
T  21156372 accataagaatattcaaagcaacaaagataagaaagaagggaagaaaacaacacacca 21156429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 463
Target Start/End: Original strand, 29100268 - 29100459
Alignment:
Q  274 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 373  Q
    ||||||||||||||||||| |||||||||||| | ||||||| |||||  ||||||||||||||| | ||||||| || |||||| ||         |||    
T  29100268 aaaactcacaaagaacaaaccctaatttctactcgtttttcaagtcacctacactcataaatgaatcataagagataatactaaaggaaacttttttatc 29100367  T
Q  374 cttccaataatgaaatttcactacccaaggtgtttac--aaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaa 463  Q
    |||| | ||||  ||| |||| |||| | ||||| ||  ||||||||| || |  |||||||||||||||||||||||||||||||||||||    
T  29100368 cttcaattaatataatctcaccacccgatgtgttcacaaaaatgtttcccaacctaagaaataaactctcaccaaagacactcaaccctaaa 29100459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 27038135 - 27038261
Alignment:
Q  80 aacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacac 179  Q
    |||| ||| |||||||||||| ||| | || ||||||| ||||||| || |||| |||||||| ||| ||| ||| ||||||||||||||  ||||||||    
T  27038135 aactaagatgtgtggagcaaatgaaatggtaatcaatgtgtaaagtgtcttcaagcaacaacaacaa-aaacagatctagatctaagtgtagagcaacac 27038233  T
Q  180 cacaagcatattcaaagcaacaaagataa 208  Q
    |||||||||| ||||||| ||||||||||    
T  27038234 cacaagcataatcaaagc-acaaagataa 27038261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 412
Target Start/End: Complemental strand, 3328326 - 3328198
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    ||||||||| |||||||||||||||||||||||  |||| ||||||| | |||| | ||||||||||||||| ||| ||         |||||||||||     
T  3328326 aaagaacaagtcctaatttctacccatttttcatatcacccacactc-tcaatgtatcctaagagaaaacacaaaaggaagttttttgatccttccaatg 3328228  T
Q  383 atgaaatttcactacccaaggtgtttacaa 412  Q
     |||||| ||||||||||||||||||||||    
T  3328227 ctgaaatctcactacccaaggtgtttacaa 3328198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 8370720 - 8370603
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||| ||| ||||  || ||||||| ||||||| ||  ||| |||||||| ||| ||| ||||||||||||||||||  |||||||||||||||||    
T  8370720 gtgtggagtaaaggaagaggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctagatctaagtgtagagcaacaccacaagcat 8370622  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||| ||||||||||    
T  8370621 aatcaaagc-acaaagataa 8370603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 27026799 - 27026916
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||| | || ||||||| ||||||| ||  ||| ||||||||  || ||| ||||||||||||||||||  |||||||||||||||||    
T  27026799 gtgtggagcaaatgaaatggtaatcaatgtgtaaagtgtctccaagcaacaacaagaa-aaacagacctagatctaagtgtagagcaacaccacaagcat 27026897  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||| ||||||||||    
T  27026898 aatcaaagc-acaaagataa 27026916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 30710024 - 30709907
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| |||||||||||||||| |  |||||||||| ||||||    
T  30710024 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctagatctaagtttagagcaacaccataagcat 30709926  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||| ||||||||||    
T  30709925 aatcaaagc-acaaagataa 30709907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 48438068 - 48438186
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||| | || ||||||   |||||||||  ||| |||||||| ||| ||| ||||||||||||||||||  |||||||||||||||||    
T  48438068 gtgtggagcaaaggaaatggtaatcaatagataaagtatctccaagcaacaacaacaa-aaacagacctagatctaagtgtagagcaacaccacaagcat 48438166  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||| ||| ||||||||    
T  48438167 aatcaaaacaataaagataa 48438186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 25516848 - 25516953
Alignment:
Q  103 aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaa 202  Q
    ||||||| |||||| |||||||||   ||||  ||||||| ||| |||||||| |||||| ||||||||| ||||||||||| |||||| |||| |||||    
T  25516848 aagtagtaatcaataagtaaagtagtctcaaataacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaaacatatttaaagtaacaa 25516947  T
Q  203 agataa 208  Q
     |||||    
T  25516948 ggataa 25516953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 358
Target Start/End: Original strand, 21353674 - 21353753
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 358  Q
    ||||||||||||| | |||||||||||||||||||||| | |||||||||| |  |||||| | |||||||||||||||||    
T  21353674 ctcacaaagaacacaacctaatttctacccatttttcatgccactcacactta-caatgaatcttaagagaaaacactaaa 21353753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 470
Target Start/End: Complemental strand, 33386557 - 33386461
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 470  Q
    |||||||||||  |||||| |||||||||||||||||||| ||||||||||| | ||||| ||   ||| |  |||||||||||||||||||||||||||    
T  33386557 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttctcaacccaagagat--cctcactacaaagacactcaaccctaaagttctct 33386461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 36028959 - 36029058
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| |||||||||||||||| |  |||||||||||||||||    
T  36028959 gtgtggagcaaatgaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctagatctaagtatagagcaacaccacaagcat 36029057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 208
Target Start/End: Original strand, 16264199 - 16264320
Alignment:
Q  85 agacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaa 184  Q
    ||||||||||||||| |||||| || ||||||| ||||||| ||  |||  ||||||| ||| ||| |  |||||||||||||||  |||||||||||||    
T  16264199 agacgtgtggagcaacagaagtggtaatcaatgtgtaaagtgtctccaagaaacaacaacaa-aaacaatcctagatctaagtgtagagcaacaccacaa 16264297  T
Q  185 gcatattcaaagcaacaaagataa 208  Q
     |||| ||||||| ||||||||||    
T  16264298 acataatcaaagc-acaaagataa 16264320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 40593016 - 40592898
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || |||||||  |||| | ||  ||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  40593016 gtgtggagcaaaggaagtggtaatcaatggataaaatgtctccaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcat 40592918  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| | ||||||    
T  40592917 aatcaaagcaatatagataa 40592898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 466
Target Start/End: Complemental strand, 1417460 - 1417281
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    ||||||||| |||||||||||||||||||||||  |||| |||||||   |||||| ||||||||||||||| |||  |         |||||| ||||     
T  1417460 aaagaacaagtcctaatttctacccatttttcatatcacccacactc-ccaatgaatcctaagagaaaacacaaaagaaaactttttgatcctttcaatg 1417362  T
Q  383 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
     |||||| |||||||| || |||||||| |||||||| || | ||||  |||| ||| |  |||||||||||||||||||||||    
T  1417361 gtgaaatctcactacctaaagtgtttac-aatgtttcccaacccaag--ataacctcactacaaagacactcaaccctaaagtt 1417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 26298888 - 26298960
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||| ||||||||| ||||||||    
T  26298888 caacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataa 26298960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 27986675 - 27986561
Alignment:
Q  92 tggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatat 190  Q
    ||||||||||| |||| || ||| ||| ||||||| || |||| |||||||| ||| |||||||||||| |||| ||||  |||||||||||||||||||    
T  27986675 tggagcaaaaggaagtggtaatctatgtgtaaagtgtcttcaagcaacaacaacaa-aaatagacctag-tcta-gtgtagagcaacaccacaagcatat 27986579  T
Q  191 tcaaagcaacaaagataa 208  Q
     |||||||| ||||||||    
T  27986578 acaaagcaataaagataa 27986561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 4386911 - 4386851
Alignment:
Q  270 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactc 329  Q
    |||||||| ||||||||||||||| |||||||||||| ||||||||| ||||| |||||||    
T  4386911 gcttaaaagctcacaaagaacaaaacctaatttctactcatttttcaagtcacccacactc 4386851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 205
Target Start/End: Original strand, 29100026 - 29100137
Alignment:
Q  91 gtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatat 190  Q
    |||||||||| |||||||| ||||||||||| | ||   |||| ||||||||   |||||  ||  ||||||||| ||||||| |||||||||| |||||    
T  29100026 gtggagcaaaggaagtagtaatcaatgagtagaatagtctcaagcaacaaca---acaaactgagatagatctaactgtgaagaaacaccacaaacatat 29100122  T
Q  191 tcaaagcaacaaaga 205  Q
    ||||||||| |||||    
T  29100123 tcaaagcaagaaaga 29100137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 412
Target Start/End: Original strand, 8126748 - 8126875
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    |||||||||  | ||||||||||||||||||   ||||| ||||||| | |||||| | ||||||||||||| ||| ||         |||||||||||     
T  8126748 aaagaacaatacttaatttctacccatttttgt-gtcacccacactc-tcaatgaatcttaagagaaaacacaaaaagaagctttttgatccttccaatg 8126845  T
Q  383 atgaaatttcactacccaaggtgtttacaa 412  Q
    ||||||| ||||||||||||||||||||||    
T  8126846 atgaaatctcactacccaaggtgtttacaa 8126875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 412
Target Start/End: Complemental strand, 18552851 - 18552726
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 383  Q
    ||||||||  |||||||||||||||||||    ||||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||      
T  18552851 aagaacaagacctaatttctacccattttgt--gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagttttttgatccttccaatgg 18552755  T
Q  384 tgaaatttcactacccaaggtgtttacaa 412  Q
    |||||| ||||||||||||||||||||||    
T  18552754 tgaaatctcactacccaaggtgtttacaa 18552726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 25929611 - 25929557
Alignment:
Q  154 acctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||| ||||||||||  ||||||||||||| |||| ||||||||||||||||||    
T  25929611 acctaaatctaagtgtagagcaacaccacaaacataatcaaagcaacaaagataa 25929557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 34482048 - 34482173
Alignment:
Q  82 cttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacacca 181  Q
    |||||| |||||| ||||| |||| | | ||||||||| ||||||   |||| ||||| || ||||||| ||||||||||| |||||||||| |||||||    
T  34482048 cttagatgtgtggggcaaaggaagga-taatcaatgagcaaagtagtttcaagcaacatcaacaacaaacagacctagatcaaagtgtgaagtaacacca 34482146  T
Q  182 caagcatattcaaagcaacaaagataa 208  Q
    |   ||||  ||||||||| |||||||    
T  34482147 cgtacataaccaaagcaaccaagataa 34482173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 466
Target Start/End: Complemental strand, 40592750 - 40592572
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    |||||||||  ||||||||||||||||||    ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  40592750 aagaacaaaatctaatttctacccattttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 40592653  T
Q  383 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  40592652 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 40592572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 25517085 - 25517146
Alignment:
Q  270 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactca 330  Q
    |||||||| ||||||||||||||| ||||||||||||  |||||||| ||||| ||||||||    
T  25517085 gcttaaaagctcacaaagaacaaaccctaatttctacttatttttcaagtcacccacactca 25517146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 434 - 467
Target Start/End: Original strand, 25517446 - 25517479
Alignment:
Q  434 aaactctcaccaaagacactcaaccctaaagttc 467  Q
    ||||||||||||||||||||||||||||||||||    
T  25517446 aaactctcaccaaagacactcaaccctaaagttc 25517479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 467
Target Start/End: Complemental strand, 27986338 - 27986245
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 467  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  ||||||||||||||||||||||||    
T  27986338 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagttc 27986245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 3328527 - 3328471
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||| ||||||||||  |||||||||||||||||| ||||| ||| ||||||||    
T  3328527 agacctaaatctaagtgtagagcaacaccacaagcataatcaaaacaataaagataa 3328471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 1309709 - 1309841
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||| ||| ||||||| || |||| |||||||| ||| ||| || ||||| |||| ||||  ||||||||||||||||    
T  1309709 gtgtggagcaaaaggaagtggtaatctatgtgtaaagtgtcttcaagcaacaacaacaa-aaacagccctag-tcta-gtgtagagcaacaccacaagca 1309805  T
Q  188 tattcaaagcaacaaagataattaagagaggaagaa 223  Q
     || ||||||||| |||||||  |||| ||||||||    
T  1309806 aatacaaagcaaccaagataagcaagaaaggaagaa 1309841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 358
Target Start/End: Original strand, 21156542 - 21156620
Alignment:
Q  279 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 358  Q
    ||||||||||||||  || ||||||| |||||||| | ||||   ||||||||||||||  |||||||||||||||||||    
T  21156542 tcacaaagaacaaaatcttatttctatccatttttaa-gtcataaacactcataaatgattcctaagagaaaacactaaa 21156620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 32143176 - 32143308
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||| ||| ||||||| ||  ||| |||||||| ||| ||| |||||||| |||| ||||  ||||||||||||||||    
T  32143176 gtgtggagcaaaaggaagtggtaatctatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctag-tcta-gtgtagagcaacaccacaagca 32143272  T
Q  188 tattcaaagcaacaaagataattaagagaggaagaa 223  Q
     || |||||||| ||||||||  |||| ||||||||    
T  32143273 aatacaaagcaataaagataagcaagaaaggaagaa 32143308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 35925398 - 35925441
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaa 195  Q
    ||||||||||||||||||  |||||||||||||||||| |||||    
T  35925398 agacctagatctaagtgtagagcaacaccacaagcataatcaaa 35925441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 411
Target Start/End: Original strand, 25795899 - 25796024
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    |||||||||  |||||||||||||||||||    ||||| ||||||| | |||||| ||||||||||||||  ||| ||         |||||||||||     
T  25795899 aaagaacaagacctaatttctacccattttgt--gtcacccacactc-tcaatgaatcctaagagaaaacataaaaggaagctttttgatccttccaatg 25795995  T
Q  383 atgaaatttcactacccaaggtgtttaca 411  Q
     |||||| |||||||||||||||||||||    
T  25795996 gtgaaatctcactacccaaggtgtttaca 25796024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 29196507 - 29196541
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttt 312  Q
    ||||||||||||||| |||||||||||||||||||    
T  29196507 ctcacaaagaacaaaccctaatttctacccatttt 29196541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 412
Target Start/End: Original strand, 35925599 - 35925723
Alignment:
Q  285 agaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 383  Q
    |||||||| |||||||||||||||||| |   ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||      
T  35925599 agaacaaaacctaatttctacccatttgt---gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagcttttg-atccttccaatgg 35925694  T
Q  384 tgaaatttcactacccaaggtgtttacaa 412  Q
    |||||| ||||||||||||||||||||||    
T  35925695 tgaaatctcactacccaaggtgtttacaa 35925723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 412
Target Start/End: Original strand, 36029212 - 36029338
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    ||||||||  |||||||||||||||||||    ||||||||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  36029212 aagaacaagacctaatttctacccattttgt--gtcactcactctcaaaatatgaatcctaagagaaaacacaaaaggaagcttttg-atccttccaatg 36029308  T
Q  383 atgaaatttcactacccaaggtgtttacaa 412  Q
     |||||| ||||||||||||||||||||||    
T  36029309 gtgaaatctcactacccaaggtgtttacaa 36029338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 325
Target Start/End: Original strand, 37466408 - 37466450
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcac 325  Q
    ||||||||| |||||||||||||||||||||||  ||||||||    
T  37466408 aaagaacaagtcctaatttctacccatttttcatatcactcac 37466450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 1306154 - 1306195
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  1306154 atccttccaatggtgaaatctcactacccaaggtgtttacaa 1306195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 1736186 - 1736145
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  1736186 atccttccaatggtgaaatctcactacccaaggtgtttacaa 1736145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 3715884 - 3715843
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  3715884 atccttccaatggtgaaatctcactacccaaggtgtttacaa 3715843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 16264553 - 16264594
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  16264553 atccttccaatggtgaaatctcactacccaaggtgtttacaa 16264594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 18553046 - 18552997
Alignment:
Q  160 atctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataat 209  Q
    ||||||||||  ||||||||||||| |||| ||||||||| |||||||||    
T  18553046 atctaagtgtagagcaacaccacaaacataatcaaagcaataaagataat 18552997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 27453164 - 27453205
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  27453164 atccttccaatggtgaaatctcactacccaaggtgtttacaa 27453205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 27974834 - 27974793
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  27974834 atccttccaatggtgaaatctcactacccaaggtgtttacaa 27974793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 32143527 - 32143568
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  32143527 atccttccaatggtgaaatctcactacccaaggtgtttacaa 32143568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 39032436 - 39032395
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  39032436 atccttccaatggtgaaatctcactacccaaggtgtttacaa 39032395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 47923786 - 47923745
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  47923786 atccttccaatggtgaaatctcactacccaaggtgtttacaa 47923745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 1417722 - 1417605
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| || |||| |||||||| ||  ||| | || || ||||||||||  || |||| |||||||||    
T  1417722 gtgtggagcaaaggaagtggtaatcaatagataaagtgtcttcaagcaacaacaaca--aaacatacataaatctaagtgtagagtaacatcacaagcat 1417625  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  1417624 aatcaaagcaataaagataa 1417605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 3716236 - 3716117
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||   |||||| ||  ||| |||||||| ||| ||| |||| || ||||||||||  ||||||||||||||||    
T  3716236 gtgtggagcaaaaggaagtggtaatcaatagataaagtgtctacaagcaacaacaacaa-aaacagacataaatctaagtgtagagcaacaccacaagca 3716138  T
Q  188 tattcaaagcaacaaagataa 208  Q
    || ||| | ||| ||||||||    
T  3716137 taatcacaacaataaagataa 3716117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 9666587 - 9666623
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttc 314  Q
    |||||||||||||||  ||||||||||||||||||||    
T  9666587 ctcacaaagaacaaaatctaatttctacccatttttc 9666623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 37387542 - 37387574
Alignment:
Q  290 aaatcctaatttctacccatttttcacgtcact 322  Q
    |||||||||||||||||||||||||| ||||||    
T  37387542 aaatcctaatttctacccatttttcaagtcact 37387574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 39040224 - 39040109
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||| |||| ||||| || ||||||| ||||||| ||  ||| |||||||| |||  || ||||||||| || |||||  |||||||||||||||||    
T  39040224 gtgtggaacaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa--aacagacctaga-cttagtgtagagcaacaccacaagcat 39040128  T
Q  189 attcaaagcaacaaagataa 208  Q
    |  |||||| ||||||||||    
T  39040127 aaacaaagc-acaaagataa 39040109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 47924043 - 47924007
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||||||||||||  |||||||||||||||||    
T  47924043 agacctagatctaagtgtagagcaacaccacaagcat 47924007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 49)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 278 - 452
Target Start/End: Complemental strand, 18674386 - 18674213
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 377  Q
    ||||||||||||||| | ||||||||| |||||||||| ||||| |||||||||||||||| | |||||||||||| |||| ||         ||||||     
T  18674386 ctcacaaagaacaaaccataatttctatccatttttcaagtcacccacactcataaatgaatcataagagaaaacattaaaggaagctttttgatcctt- 18674288  T
Q  378 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacac 452  Q
    |||||||||||| ||||| | |||||||||||| |||||||| || | |||||| ||||||||||||||||||||    
T  18674287 caataatgaaatctcactgctcaaggtgtttacgaatgtttcccaacccaagaattaaactctcaccaaagacac 18674213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 2869938 - 2869819
Alignment:
Q  92 tggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaa---atagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||| |||||||| |||||||||||||||| |||||| |||||||| ||||||   ||||||||| ||||||||||  |||||||||| ||||||    
T  2869938 tggagcaaaggaagtagtgatcaatgagtaaagtagcatcaaacaacaacaacaacaacaaatagacctaaatctaagtgtagagcaacaccataagcat 2869839  T
Q  189 attcaaagcaacaaagataa 208  Q
    ||||||||||||||||||||    
T  2869838 attcaaagcaacaaagataa 2869819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 270 - 467
Target Start/End: Complemental strand, 28770768 - 28770572
Alignment:
Q  270 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnn 368  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||| ||||  |||||||  || |||| ||||||||||||||||||| ||           
T  28770768 gcttaaaagctcacaaagaacaaactctaatttctacccatttttcaagtcatacacactcgcaa-tgaatcctaagagaaaacactaaaggaaactttt 28770670  T
Q  369 nnatccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 467  Q
      |||||||   |||||| || ||||||||||||||||||||||||||||  || |  |||||| |||| |||||||||||||||||||||||||||||    
T  28770669 ttatccttcagctaatgagatctcactacccaaggtgtttacaaatgttttccaaccaaagaaa-aaacactcaccaaagacactcaaccctaaagttc 28770572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 16388757 - 16388568
Alignment:
Q  48 ttgtgaattcagacaaataattataataataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaaca---acatc 144  Q
    ||||||||||| ||||||||| | |  |||||| |||||| |||||||||||||  |||||| ||||||||||||||||   |||| || ||   ||| |    
T  16388757 ttgtgaattcaaacaaataatcacatcaataaa-cttagatgtgtggagcaaaaatagtagtaatcaatgagtaaagtagtctcaagcagcagcaacaac 16388659  T
Q  145 aacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataattaagagaggaagaaaccaacacacca 235  Q
    |||||| |||||||||| || |||||||||||||| | |||||||| |||||||| ||||||||   ||| |||| |||| ||||||||||    
T  16388658 aacaaacagacctagatgtatgtgtgaagcaacactataagcatatccaaagcaataaagataagagagaaaggaggaaaacaacacacca 16388568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 28770972 - 28770893
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataattaaga 214  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||    
T  28770972 caacaactacaacaaatagacctagatctaagtgtgaagcaacaccacaagcataatcaaagcaaaaaatataataaaga 28770893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 376 - 466
Target Start/End: Original strand, 12632890 - 12632980
Alignment:
Q  376 tccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
    ||||||||| |||| |||  ||||||||||||||||||||||||||| | ||| |||||||||||||  ||||||||||||||||||||||    
T  12632890 tccaataataaaatctcatcacccaaggtgtttacaaatgtttctcaacccaataaataaactctcattaaagacactcaaccctaaagtt 12632980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 3277903 - 3277975
Alignment:
Q  136 aacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| ||||||||    
T  3277903 aacaacaacaacaaatagatctagatctaagtgtgaagcaacactacaaacatattcaaagcaaaaaagataa 3277975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 23078715 - 23078597
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| | ||||||||||||||||  |||||||||||||||||    
T  23078715 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaaaaaacatacctagatctaagtgtagagcaacaccacaagcat 23078616  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||| ||||||||||    
T  23078615 aatcaaagc-acaaagataa 23078597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 5699694 - 5699758
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| |||||    
T  5699694 caacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagcagcaacgataa 5699758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 33528864 - 33528746
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || |||||||  |||||| ||  ||| |||||||| ||| ||| |||||||||||||| |||  |||||||||||||||||    
T  33528864 gtgtggagcaaaggaagtggtaatcaatggataaagtgtccccaagcaacaacaacaa-aaacagacctagatctaaatgtagagcaacaccacaagcat 33528766  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  33528765 aatcaaagcaataaagataa 33528746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 34388713 - 34388830
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||  ||||||| || |||| |||||||| ||| ||| ||||||||||||||||||  ||||||||||||||||     
T  34388713 gtgtggagcaaaggaagtggtaatcaatatgtaaagtgtcttcaagcaacaacaacaa-aaacagacctagatctaagtgtagagcaacaccacaagcaa 34388811  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||| ||||||||||    
T  34388812 aatcaaagc-acaaagataa 34388830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 270 - 357
Target Start/End: Complemental strand, 2869687 - 2869599
Alignment:
Q  270 gcttaaaa-ctcacaaagaacaaat-cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaa 357  Q
    |||||||| |||||||||||||||  |||||||||||||||||||||| ||||| ||||||| | |||||| ||||||||||||||||||    
T  2869687 gcttaaaagctcacaaagaacaaaaacctaatttctacccatttttcaagtcacccacactc-tcaatgaatcctaagagaaaacactaa 2869599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 466
Target Start/End: Original strand, 3278118 - 3278297
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 383  Q
    |||||||||| |  |||||| | |||||||||  ||||||||||||| || |||||||||||||||||| ||||| ||         |||| ||| ||||    
T  3278118 aagaacaaattccgatttcttctcatttttcaattcactcacactcacaa-tgaaccctaagagaaaacgctaaaggaagttttttgatccgtcctataa 3278216  T
Q  384 tgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
    |||||| |||||| |||||||||||||||||||||  || | ||||  | || |||||| ||| || ||||||||||||||||    
T  3278217 tgaaatctcactatccaaggtgtttacaaatgttttccaacccaag--agaatctctcatcaacgatactcaaccctaaagtt 3278297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 8039913 - 8040032
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||   |||||| || |||| |||||||| ||| ||| ||||||| ||||||||||  ||||||||||||||||    
T  8039913 gtgtggagcaaaaggaagtggtaatcaatagataaagtgtcttcaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagca 8040011  T
Q  188 tattcaaagcaacaaagataa 208  Q
    || ||||||||| ||||||||    
T  8040012 taatcaaagcaataaagataa 8040032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 10445689 - 10445569
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || |||||||  |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  ||||| ||||||||||    
T  10445689 gtgtggagcaaaaggaagtggtaatcaatggataaagtgtctccaagcaacaacaacaaaaaacagacctaaatctaagtgtagagcaaaaccacaagca 10445590  T
Q  188 tattcaaagcaacaaagataa 208  Q
    || ||||||||| ||||||||    
T  10445589 taatcaaagcaataaagataa 10445569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 10707496 - 10707377
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaa-tagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| || ||||||||||||||||  ||||||||  ||||||    
T  10707496 gtgtggagcaaaagaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaagaaaatatacctagatctaagtgtagagcaacactgcaagca 10707397  T
Q  188 tattcaaagcaacaaagataa 208  Q
    || ||||||| ||||||||||    
T  10707396 taatcaaagc-acaaagataa 10707377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 15903875 - 15903800
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacac 354  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| ||||||| | |||||| |||| ||||||||||    
T  15903875 ctcacaaagaacaaattctaatttctacccatttttcaagtcacccacactc-tcaatgaatcctatgagaaaacac 15903800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 27149109 - 27149002
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaa-atagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    ||||||||||||  ||||  | |||||||||||||||| |||||| |||||||| ||| || ||||| ||| |||||  ||| |||||||||||||||||    
T  27149109 gtgtggagcaaagaaagtgataatcaatgagtaaagtagcatcaagcaacaacaacaataacatagatctaaatctatttgtaaagcaacaccacaagca 27149010  T
Q  188 tattcaaa 195  Q
    ||||||||    
T  27149009 tattcaaa 27149002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 31055896 - 31056014
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  31055896 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcat 31055994  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  31055995 aatcaaagcaataaagataa 31056014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 18674598 - 18674525
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||||  |||||| |||||||||| ||||||||||| |||||||| ||||||||| || ||||||||||||    
T  18674598 caacaacaataacaaacagacctagatttaagtgtgaagtaacaccacgagcatattcgaaacaacaaagataa 18674525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 17865057 - 17865176
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||| ||| ||||| || |||||||  |||| | ||  ||| |||||||| ||| ||| | ||||||||||||||||  |||||||||||||||||    
T  17865057 gtgtggagaaaaggaagtggtaatcaatggataaaatgtctccaaccaacaacaacaa-aaacatacctagatctaagtgtagagcaacaccacaagcat 17865155  T
Q  189 attcaaagcaacaaagataat 209  Q
    | ||||||||| |||||||||    
T  17865156 aatcaaagcaataaagataat 17865176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 20522074 - 20522192
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||| ||| ||||| || |||||||  |||||| ||  ||| ||| |||| ||| ||| |||| |||||||||||||  |||||||||||||||||    
T  20522074 gtgtggagaaaaggaagtggtaatcaatggataaagtgtctccaagcaaaaacaacaaaaaa-agacatagatctaagtgtagagcaacaccacaagcat 20522172  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  20522173 aatcaaagcaataaagataa 20522192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 202
Target Start/End: Original strand, 40014785 - 40014893
Alignment:
Q  92 tggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatatt 191  Q
    ||||||||| |||||||| |||||||   ||||| || |||| |||||||| ||||||| || |||| | |||||||| || || ||||||||||||| |    
T  40014785 tggagcaaaggaagtagtaatcaatgg--aaagtgtcctcaagcaacaacaacaacaaacagtcctaaaactaagtgtaaaacatcaccacaagcataat 40014882  T
Q  192 caaagcaacaa 202  Q
    |||||||||||    
T  40014883 caaagcaacaa 40014893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 412
Target Start/End: Complemental strand, 14698986 - 14698861
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 383  Q
    ||||||||  |||||||||||||||||||    ||||| ||||||| | |||||| ||||||||||||||| ||| ||         ||||||||||||     
T  14698986 aagaacaagacctaatttctacccattttgt--gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatag 14698890  T
Q  384 tgaaatttcactacccaaggtgtttacaa 412  Q
    |||||| ||||||||||||||||||||||    
T  14698889 tgaaatctcactacccaaggtgtttacaa 14698861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 8390347 - 8390275
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||| ||| ||  ||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||||    
T  8390347 caacaacaacaaaaaccagacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataa 8390275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 41586429 - 41586351
Alignment:
Q  386 aaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
    |||| |||||||||||||||||||||| |||||  || | ||||| |  | ||||||||||||||||||||||||||||||    
T  41586429 aaatctcactacccaaggtgtttacaactgttttccaacccaagaga--agctctcaccaaagacactcaaccctaaagtt 41586351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 412
Target Start/End: Complemental strand, 2838015 - 2837881
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 377  Q
    ||||||||||||| | |||||||| | ||||||||||| ||||| ||| ||  | |||||| ||||||||||||||||||| ||         |||||||    
T  2838015 ctcacaaagaacacaacctaatttttgcccatttttcatgtcacccac-cttctcaatgaatcctaagagaaaacactaaaggaatattttttatccttc 2837917  T
Q  378 caataatgaaatt-tcactacccaaggtgtttacaa 412  Q
    ||||  ||||||| |||||| |||||||||||||||    
T  2837916 caatggtgaaattctcactatccaaggtgtttacaa 2837881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 12632456 - 12632524
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaa 203  Q
    ||||||||  |||||| |||||||||| ||||||| ||||||||||||||||||||  |||| ||||||    
T  12632456 caacaacaataacaaacagacctagatataagtgtcaagcaacaccacaagcatatctaaaggaacaaa 12632524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 13569182 - 13569301
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||| ||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| || | ||||||||||| |  || ||||||||||||||    
T  13569182 gtgtggagtaaaggaagtggtaatcaatgtgtaaagtgtctccaaacaacaacaacaaaaaacaggcttagatctaagtatagagaaacaccacaagcat 13569281  T
Q  189 attcaaagcaacaaagataat 209  Q
    | ||||||| |||||||||||    
T  13569282 aatcaaagc-acaaagataat 13569301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 16388291 - 16388399
Alignment:
Q  79 aaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaaca 178  Q
    ||||||||| ||||||||||||  ||||||| |||||||| |||||||   |||| || ||||| ||||||| | || || || |||||||||| |||||    
T  16388291 aaacttagatgtgtggagcaaagaaagtagtaatcaatgaataaagtagtctcaagcagcaacaacaacaaacaaacatatatataagtgtgaaacaaca 16388390  T
Q  179 ccacaagca 187  Q
    | |||||||    
T  16388391 ctacaagca 16388399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 16940452 - 16940334
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaat-caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||| ||||| || |||||||| |||||| || || || |||||||| ||| ||| |||||||||||||||||   ||| |||||| |||||    
T  16940452 gtgtggagcaaaggaagtggtaatcaatgaataaagtgtc-tctatgcaacaacaacaa-aaacagacctagatctaagtgcagagcgacaccaaaagca 16940355  T
Q  188 tattcaaagcaacaaagataa 208  Q
    || ||||||||| ||||||||    
T  16940354 taatcaaagcaataaagataa 16940334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 17011117 - 17010999
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaat-caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||| ||||| || |||||||| |||||| || || || |||||||| ||| ||| |||||||||||||||||   ||| |||||| |||||    
T  17011117 gtgtggagcaaaggaagtggtaatcaatgaataaagtgtc-tctatgcaacaacaacaa-aaacagacctagatctaagtgcagagcgacaccaaaagca 17011020  T
Q  188 tattcaaagcaacaaagataa 208  Q
    || ||||||||| ||||||||    
T  17011019 taatcaaagcaataaagataa 17010999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 14699241 - 14699128
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatag---acctagatctaagtgtgaagcaacaccacaag 185  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||||||| ||   ||||| ||||||||||  ||||||||||||||    
T  14699241 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaacaaaaagcagacctaaatctaagtgtagagcaacaccacaag 14699142  T
Q  186 catattcaaagcaa 199  Q
    |||| |||||||||    
T  14699141 cataatcaaagcaa 14699128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 33117990 - 33118108
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||| |||| ||||| || ||||||   |||||| || |||| || ||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  33117990 gtgtggatcaaaggaagtggtaatcaatagataaagtgtcttcaaacatcaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcat 33118088  T
Q  189 attcaaagcaacaaagataa 208  Q
    | |||||| || ||||||||    
T  33118089 aatcaaagtaataaagataa 33118108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 42039912 - 42039796
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| | |||||||| |||||||  |||||||||||||||||    
T  42039912 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacatacctagat-taagtgtagagcaacaccacaagcat 42039815  T
Q  189 attcaaagcaacaaagataa 208  Q
    |  |||||| ||||||||||    
T  42039814 aaacaaagc-acaaagataa 42039796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 39532835 - 39532905
Alignment:
Q  138 caacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||| ||| ||||||||||| ||||||||| ||||||||||||||| ||||  | |||||| ||||||||    
T  39532835 caacaacaataaatagacctaaatctaagtgcgaagcaacaccacaaacataacctaagcaataaagataa 39532905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 23078364 - 23078323
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  23078364 atccttccaatgatgaaatctcactacccaaggtgtttacaa 23078323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 39482830 - 39482903
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||| ||| ||| ||||||| ||||||||||  | ||||||||||||||||  |||||||| ||||||||    
T  39482830 caacaacaacaaaaaacagacctaaatctaagtgtagaacaacaccacaagcataaccaaagcaataaagataa 39482903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 466
Target Start/End: Complemental strand, 36757655 - 36757563
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  |||||||||||||||||||||||    
T  36757655 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagtt 36757563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 36758004 - 36757889
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||  ||| ||||||||| || |||||  |||||||||||||||||    
T  36758004 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaaca--aaacagacctaga-cttagtgtagagcaacaccacaagcat 36757908  T
Q  189 attcaaagcaacaaagataa 208  Q
    |  |||||| ||||||||||    
T  36757907 aaacaaagc-acaaagataa 36757889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 28771056 - 28770997
Alignment:
Q  60 acaaataattataataataaaacttagacgtgtggagcaaaagaagtagtcatcaatgag 119  Q
    ||||||||| |||  ||||||| |||||||||||| ||||| |||||||| |||||||||    
T  28771056 acaaataatcatatcaataaaatttagacgtgtggtgcaaatgaagtagtaatcaatgag 28770997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 412
Target Start/End: Original strand, 34388969 - 34389096
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    ||||||||  |||||||||||||||||||    ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  34388969 aagaacaagacctaatttctacccattttgt--gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 34389066  T
Q  383 atgaaatttcactacccaaggtgtttacaa 412  Q
     |||||| ||||||||||||||||||||||    
T  34389067 gtgaaatctcactacccaaggtgtttacaa 34389096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 34393347 - 34393398
Alignment:
Q  157 tagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||| ||||||| ||||| || |||||||| ||||||||||||||||||||    
T  34393347 tagatttaagtgttaagcagcagcacaagcacattcaaagcaacaaagataa 34393398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 34682578 - 34682472
Alignment:
Q  89 gtgtggagcaaaagaa-gtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||||| || || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  ||||||||||||||||    
T  34682578 gtgtggagcaaaagaaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagca 34682480  T
Q  188 tattcaaa 195  Q
    || |||||    
T  34682479 taatcaaa 34682472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 8040268 - 8040309
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  8040268 atccttccaatggtgaaatctcactacccaaggtgtttacaa 8040309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 10445360 - 10445319
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  10445360 atccttccaatggtgaaatctcactacccaaggtgtttacaa 10445319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 21630149 - 21630190
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21630149 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21630190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 1631853 - 1631888
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttc 314  Q
    |||||||||||||| ||||||||||||||||||||||    
T  1631853 ctcacaaagaacaa-tcctaatttctacccatttttc 1631888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 35397628 - 35397694
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaa 351  Q
    |||||||||| ||||||||||| |||||||||| ||||| |||| || | |||||| ||||||||||||    
T  35397628 aaagaacaaa-cctaatttctatccatttttcaagtcacccacaatc-tcaatgaatcctaagagaaaa 35397694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 34842448 - 34842576
Alignment:
Q  79 aaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaaca 178  Q
    ||||||||| |||||||| ||| |||||||| ||||| |||||||||| | |||| || ||||| ||| ||| | |||||||||||||||||||||||||    
T  34842448 aaacttagatgtgtggagtaaaggaagtagtaatcaa-gagtaaagtagcctcaagcagcaacaacaataaacaaacctagatctaagtgtgaagcaaca 34842546  T
Q  179 ccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||||||| | |||||||||||||||    
T  34842547 ccacaagcatatccgaagcaacaaagataa 34842576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 207
Target Start/End: Original strand, 30899697 - 30899832
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaa---atagacctagatctaagtgtga 171  Q
    ||||||||||||| ||||||||| |||||| |||| ||||||||| |||||| | |||| |||||||| ||||||   ||||||||||||| |||||| |    
T  30899697 aataaaacttagatgtgtggagctaaagaaatagtaatcaatgagcaaagtagcctcaagcaacaacaacaacaacacatagacctagatcaaagtgtta 30899796  T
Q  172 agcaacaccacaagcatattcaaagcaacaaagata 207  Q
    |||||||||||||| |||  |||| |||||||||||    
T  30899797 agcaacaccacaagtataaccaaaacaacaaagata 30899832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 5610985 - 5611142
Alignment:
Q  78 aaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaac 177  Q
    |||||||||  | ||| |||||| |||||||| ||||||||||||||||   | || |||||| |  |||||| | ||||||||||||| ||||| ||||    
T  5610985 aaaacttaggtgagtgaagcaaatgaagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaaacctagatctaagagtgaaacaac 5611084  T
Q  178 accacaagcatattcaaagcaacaaagataattaagagaggaagaaaccaacacacca 235  Q
    |||| ||| ||||||||||||||||||||||  ||||  |||||||| ||||||||||    
T  5611085 accataagaatattcaaagcaacaaagataagaaagaagggaagaaaacaacacacca 5611142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 274 - 467
Target Start/End: Original strand, 2630339 - 2630530
Alignment:
Q  274 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 373  Q
    ||||| ||||||||||||| |||||||| ||  ||||||||| ||||| | ||||||  |||||| ||||||||||||||||||| ||         |||    
T  2630339 aaaacacacaaagaacaaaacctaatttttatacatttttcaagtcaccctcactca-caatgaatcctaagagaaaacactaaaggaagctttttgatc 2630437  T
Q  374 cttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 467  Q
    ||| ||||  ||||||||||||| | ||| ||||| ||||||||||| | |  || |||||||||||||||||| || ||||||| ||||||||    
T  2630438 ctttcaatggtgaaatttcactatcaaagatgtttgcaaatgtttcttaaccaaataaataaactctcaccaaa-actctcaaccataaagttc 2630530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 284 - 466
Target Start/End: Complemental strand, 31300574 - 31300396
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 383  Q
    |||||||| ||||||||||||||||||| |||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||      
T  31300574 aagaacaagtcctaatttctacccatttctcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagccttttgatccttccaatgg 31300476  T
Q  384 tgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
    |||||| |||||||||||||||||||| ||||||||||| | ||||  | || ||| |  ||||||||||||||| |||||||    
T  31300475 tgaaatctcactacccaaggtgtttac-aatgtttctcaacccaag--agaacctcactacaaagacactcaaccttaaagtt 31300396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 14520083 - 14520200
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| ||||||||||||||||||  |||||||||||||||||    
T  14520083 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctagatctaagtgtagagcaacaccacaagcat 14520181  T
Q  189 attcaaagcaacaaagataa 208  Q
    |  |||||| ||||||||||    
T  14520182 aaacaaagc-acaaagataa 14520200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 412
Target Start/End: Original strand, 28832374 - 28832502
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    ||||||||| | |||||||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  28832374 aaagaacaagttctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 28832472  T
Q  383 atgaaatttcactacccaaggtgtttacaa 412  Q
     |||||| ||||||||||||||||||||||    
T  28832473 gtgaaatctcactacccaaggtgtttacaa 28832502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 33030934 - 33030854
Alignment:
Q  270 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaa 350  Q
    |||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||| | |||||| |||||||||||    
T  33030934 gcttaaaagctcacaaagaacaaaacataatttctacccatttttcaagtcactcacactc-tcaatgaatcctaagagaaa 33030854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 3880156 - 3880272
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||   |||||| || |||||||||||||  ||||    |||||| |||||||||| |||||||||||||||||    
T  3880156 gtgtggagcaaaaggaagtggtaatcaatagataaagtgtcttcaatcaacaacaaaaaca----gacctaaatctaagtgtaaagcaacaccacaagca 3880251  T
Q  188 tattcaaagcaacaaagataa 208  Q
    || ||||||||| ||||||||    
T  3880252 taatcaaagcaataaagataa 3880272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 6741961 - 6742039
Alignment:
Q  275 aaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacac 354  Q
    |||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||| | |||||| ||||||| |||||||    
T  6741961 aaactcacaaagaacaaaacctaatttctactcatttttcaagtcacccacactc-tcaatgaatcctaagaaaaaacac 6742039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 294 - 412
Target Start/End: Complemental strand, 11181800 - 11181684
Alignment:
Q  294 cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataatgaaatttca 393  Q
    ||||||||||||||||||| || ||||| |||||||| || |||| ||||||||||||||| ||| ||         |||||||||||  ||||||||||    
T  11181800 cctaatttctacccatttt-catgtcacccacactcacaa-tgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatttca 11181703  T
Q  394 ctacccaaggtgtttacaa 412  Q
    |||||||||||||||||||    
T  11181702 ctacccaaggtgtttacaa 11181684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 28832114 - 28832231
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || |||||||  |||||| || |||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  28832114 gtgtggagcaaaggaagtggtaatcaatggataaagtgtcttcaagcaacaacaacaa-aaacagaccta-atctaagtgtagagcaacaccacaagcat 28832211  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||| ||| ||||||||    
T  28832212 aatcaaatcaataaagataa 28832231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 17004203 - 17004085
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||| |||||||||| |||||||||||||||||    
T  17004203 gtgtggagcaaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaacagacctaaatctaagtgt-aagcaacaccacaagca 17004106  T
Q  188 tattcaaagcaacaaagataa 208  Q
    || ||||||||| ||||||||    
T  17004105 taatcaaagcaaaaaagataa 17004085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 19588600 - 19588718
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||  ||  ||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  19588600 gtgtggagcaaaggaagtggtaatcaatagataaagcgtctccaagcaacaacaacaaaaaa-agacctaaatctaagtgtagagcaacaccacaagcat 19588698  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  19588699 aatcaaagcaataaagataa 19588718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 3651613 - 3651686
Alignment:
Q  279 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaaca 353  Q
    |||||||||||||| |||||||||||||||||||||| |||||||| ||  || |||||| ||||||| ||||||    
T  3651613 tcacaaagaacaaaccctaatttctacccatttttcaagtcactcaaacctat-aatgaatcctaagataaaaca 3651686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 408
Target Start/End: Complemental strand, 42127390 - 42127266
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    ||||||||| ||||| |||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| |||  |         |||||||||||     
T  42127390 aaagaacaagtcctactttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatg 42127292  T
Q  383 atgaaatttcactacccaaggtgttt 408  Q
     |||||| ||||||||||||||||||    
T  42127291 gtgaaatctcactacccaaggtgttt 42127266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 463
Target Start/End: Complemental strand, 3325885 - 3325821
Alignment:
Q  396 acccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaa 463  Q
    ||||||||||||||||||||||||||| |||||||    ||| |||||||||||||||| ||||||||    
T  3325885 acccaaggtgtttacaaatgtttctcaactcaaga---gaacactcaccaaagacactcgaccctaaa 3325821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 12084357 - 12084302
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||||    
T  12084357 agacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataa 12084302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 24553748 - 24553631
Alignment:
Q  90 tgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcata 189  Q
    ||||||||||| |||||  | |||||||  |||||| ||  ||| ||||| || ||| ||| ||||||| ||||||||||  || |||||||||||||||    
T  24553748 tgtggagcaaaggaagtgataatcaatggataaagtgtctccaagcaacatcaacaa-aaacagacctaaatctaagtgtagagaaacaccacaagcata 24553650  T
Q  190 ttcaaagcaacaaagataa 208  Q
     ||||||||| ||||||||    
T  24553649 atcaaagcaataaagataa 24553631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 2630130 - 2630203
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||||  ||||||||| |||| |||||||||   |||||||||||||||||||| ||||||| | ||||||    
T  2630130 caacaacaaaaacaaataggcctaaatctaagtgcagagcaacaccacaagcatatttaaagcaatagagataa 2630203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 466
Target Start/End: Original strand, 30900070 - 30900161
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
    ||||||||  ||||||||| ||||||||||||||||||| |||||||   || ||||||  |||| | ||||| ||| ||||||||||||||||||    
T  30900070 atccttcctctaatgaaatctcactacccaaggtgtttataaatgtt--ccaactcaag--ataacccctcacaaaatacactcaaccctaaagtt 30900161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 358
Target Start/End: Original strand, 5611255 - 5611333
Alignment:
Q  279 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 358  Q
    ||||||||||||||  || ||||||| |||||||| | ||||   ||||||||||||||  |||||||||||||||||||    
T  5611255 tcacaaagaacaaaatcttatttctatccatttttaa-gtcataaacactcataaatgattcctaagagaaaacactaaa 5611333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 9353573 - 9353458
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || | ||||| ||||||| ||  ||| |||||||| ||| ||| |||||||| |||| ||||  |||||||||||||||||    
T  9353573 gtgtggagcaaaggaagtggtaaacaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagacctag-tcta-gtgtagagcaacaccacaagcat 9353477  T
Q  189 attcaaagcaacaaagataa 208  Q
    || ||||| |||||||||||    
T  9353476 atacaaag-aacaaagataa 9353458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 412
Target Start/End: Original strand, 10281870 - 10281997
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    ||||||||  |||||||||||||||||||    ||||| |||||||| || ||||| ||||||||||||||| |||  |         |||||||||||     
T  10281870 aagaacaagacctaatttctacccattttgt--gtcacccacactcacaatatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatg 10281967  T
Q  383 atgaaatttcactacccaaggtgtttacaa 412  Q
     |||||| ||||||||||||||||||||||    
T  10281968 gtgaaatctcactacccaaggtgtttacaa 10281997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 412
Target Start/End: Complemental strand, 17003938 - 17003811
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    ||||||||  ||||||||||||||||||   |  |||||||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  17003938 aagaacaagacctaatttctacccattta--atttcactcactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 17003841  T
Q  383 atgaaatttcactacccaaggtgtttacaa 412  Q
     |||||| ||||||||||||||||||||||    
T  17003840 gtgaaatctcactacccaaggtgtttacaa 17003811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 9353225 - 9353184
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  9353225 atccttccaatggtgaaatctcactacccaaggtgtttacaa 9353184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 11916865 - 11916824
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  11916865 atccttccaatggtgaaatctcactacccaaggtgtttacaa 11916824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 31183022 - 31182986
Alignment:
Q  275 aaactcacaaagaacaaatcctaatttctacccatttt 312  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  31183022 aaactcacaaagaacaa-tcctaatttctacccatttt 31182986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 36932241 - 36932200
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  36932241 atccttccaatggtgaaatctcactacccaaggtgtttacaa 36932200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 38219604 - 38219645
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  38219604 atccttccaatggtgaaatctcactacccaaggtgtttacaa 38219645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 11182005 - 11181957
Alignment:
Q  160 atctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||||||  ||||| |||||||||||| ||||||||| ||||||||    
T  11182005 atctaagtgtagagcaataccacaagcataatcaaagcaataaagataa 11181957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 19806432 - 19806395
Alignment:
Q  275 aaactcacaaagaacaaatcctaatttctacccatttttc 314  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  19806432 aaactcacaaagaacaa--cctaatttctacccatttttc 19806395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 33831727 - 33831692
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttc 314  Q
    ||||||||||||||| |||||||||||||||||||||    
T  33831727 ctcacaaagaacaaa-cctaatttctacccatttttc 33831692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 34842715 - 34842759
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcact 322  Q
    ||||| ||||||| |||||||||||||| ||||||||| ||||||    
T  34842715 ctcaccaagaacatatcctaatttctactcatttttcaagtcact 34842759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 36932593 - 36932476
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||  || ||||||| ||||||| ||  ||| |||||||| ||| ||| |||||||| |||| ||||  ||||||||||||||||    
T  36932593 gtgtggagcaaaaggaagaggtaatcaatgtgtaaagtgtctccaagcaacaacaacaaaaaacagacctag-tcta-gtgtagagcaacaccacaagca 36932496  T
Q  188 tattcaaagcaacaaagataa 208  Q
    ||  ||||| |||||||||||    
T  36932495 taaacaaag-aacaaagataa 36932476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 42127652 - 42127535
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||||||  |||| || |||||||  |||||| ||  ||| |||||||| |||  || |||| || |||||| |||  |||||||||||||||||    
T  42127652 gtgtggagcaaagaaagtggtaatcaatggataaagtgtctccaagcaacaacaacaa--aacagacttaaatctaattgtagagcaacaccacaagcat 42127555  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||| ||| ||||||||    
T  42127554 aatcaaaacaataaagataa 42127535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 270 - 464
Target Start/End: Original strand, 14785 - 14979
Alignment:
Q  270 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaa-tgaaccctaagagaaaacactaaatgannnnnn 367  Q
    |||||||| |||||||||||| || |||| || ||||| |||||||| ||||| |||||||| ||| |||| ||||||||||||||||||| ||          
T  14785 gcttaaaagctcacaaagaactaaccctagttcctacctatttttcaagtcacccacactcacaaagtgaatcctaagagaaaacactaaaggagttttt 14884  T
Q  368 nnnatccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaag 464  Q
       || ||||||||||| |||| |||| ||| ||||| |||||||||||||| || | ||| |||||||||||||||||||||| ||||||||||||    
T  14885 g--atgcttccaataataaaatctcaccaccaaaggtatttacaaatgtttcccaacccaaaaaataaactctcaccaaagacattcaaccctaaag 14979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 14593 - 14657
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||| | ||||| |||||||| ||||| |||||| ||||||| ||||||| |||||||||||    
T  14593 caacaaacatacctatatctaagtatgaagaaacacctcaagcatgttcaaagaaacaaagataa 14657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 467
Target Start/End: Complemental strand, 25116690 - 25116498
Alignment:
Q  274 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 373  Q
    ||||||||||||||| ||  |||||||| |||||  |||||| ||||  ||||||||||||| || | |||||||||||||||||  |         |||    
T  25116690 aaaactcacaaagaagaacccctaatttttaccc--ttttcaagtcatccacactcataaataaatcttaagagaaaacactaaagaaatttttttaatc 25116593  T
Q  374 cttccaataatgaaatttcactaccc-aaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 467  Q
    |||| ||||||||||| ||||||||| || ||||||||||||||||| || | ||| |||||||||||||| ||||||||||||| |||||||||    
T  25116592 cttcaaataatgaaatctcactaccctaatgtgtttacaaatgtttcccaacccaataaataaactctcacaaaagacactcaactctaaagttc 25116498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 29651664 - 29651783
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || |||||||| |||||| ||   ||||||||||| ||| ||| |||| |||||||||||||  |||||||||||||||||    
T  29651664 gtgtggagcaaaggaagtggtaatcaatgaataaagtgtctataatcaacaacaacaaaaaacagacttagatctaagtgtagagcaacaccacaagcat 29651763  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  29651764 aatcaaagcaataaagataa 29651783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 470
Target Start/End: Original strand, 8281430 - 8281620
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 377  Q
    |||||||||||||||| |||||||||| | ||| || | ||||| | |||||| || |||| || |||||||||||||||| ||         || ||||    
T  8281430 ctcacaaagaacaaattctaatttctatcaattatttaagtcacccgcactcacaa-tgaatccaaagagaaaacactaaaggaagtttttttattcttc 8281528  T
Q  378 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 470  Q
    |  |||||| || ||||||||||||||||||||||||| ||| || | ||||||| ||||||||| ||||||  | |||||||||||||||||    
T  8281529 ctctaatgagatctcactacccaaggtgtttacaaatggttcccaacacaagaaa-aaactctcatcaaagatgcccaaccctaaagttctct 8281620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 48382667 - 48382606
Alignment:
Q  148 aaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataat 209  Q
    ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||    
T  48382667 aaatagacctagatctaagtgtgaagcaacaccacaaacataattaaagcaacaaagataat 48382606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 283 - 466
Target Start/End: Complemental strand, 47098804 - 47098626
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    ||||||||| |||||||||||||||| ||||||| |||| ||||||| | |||||| ||||||| ||||||| ||| ||         |||||||||||     
T  47098804 aaagaacaagtcctaatttctaccca-ttttcacatcacccacactc-tcaatgaaacctaagaaaaaacacaaaaggaagctttttgatccttccaatg 47098707  T
Q  383 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  47098706 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcgctacaaagacactcaaccctaaagtt 47098626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 466
Target Start/End: Complemental strand, 47102821 - 47102640
Alignment:
Q  283 aaagaacaaatcctaatttcta--cccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaa 380  Q
    ||||||||| ||||||||||||  |||||||||||  |||||||||||| | |||||| ||||||| ||||||| |||  |         ||||||||||    
T  47102821 aaagaacaagtcctaatttctatacccatttttcatatcactcacactc-tcaatgaatcctaagaaaaaacacaaaagaaagctttttgatccttccaa 47102723  T
Q  381 taatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
    | ||||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  47102722 tgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcactacaaagacactcaaccctaaagtt 47102640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 283 - 412
Target Start/End: Original strand, 19073046 - 19073173
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    |||||||||  |||||||||||||||||||    |||||||||||||  ||||||||||||||||||||||| ||| ||         |||||||||||     
T  19073046 aaagaacaatacctaatttctacccattttgt--gtcactcacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatg 19073143  T
Q  383 atgaaatttcactacccaaggtgtttacaa 412  Q
     |||||| |||||| |||||||||||||||    
T  19073144 gtgaaatctcactatccaaggtgtttacaa 19073173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 283 - 412
Target Start/End: Original strand, 19120936 - 19121063
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    |||||||||  |||||||||||||||||||    |||||||||||||  ||||||||||||||||||||||| ||| ||         |||||||||||     
T  19120936 aaagaacaatacctaatttctacccattttgt--gtcactcacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatg 19121033  T
Q  383 atgaaatttcactacccaaggtgtttacaa 412  Q
     |||||| |||||| |||||||||||||||    
T  19121034 gtgaaatctcactatccaaggtgtttacaa 19121063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 40816976 - 40816857
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  ||||||||||| |||||    
T  40816976 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaaaaaacagacctaaatctaagtgtagagcaacaccacgagcat 40816877  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  40816876 aatcaaagcaataaagataa 40816857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 32737236 - 32737127
Alignment:
Q  91 gtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatat 190  Q
    |||||||||| ||||| || ||||||||| |||||| | |||| |||||||| | |  || |||| ||||||||||||||||||||||||||||  |||     
T  32737236 gtggagcaaaggaagtggtgatcaatgagcaaagtagcctcaagcaacaacaacga--aacagacttagatctaagtgtgaagcaacaccacaaatataa 32737139  T
Q  191 tcaaagcaacaa 202  Q
    ||||||| ||||    
T  32737138 tcaaagctacaa 32737127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 284 - 466
Target Start/End: Original strand, 32889558 - 32889734
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 383  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         | |||||||||      
T  32889558 aagaacaagtcctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacac-aaaagaagcttttgaa-ccttccaatgg 32889654  T
Q  384 tgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
    |||||| |||||||||||||||||||| |||||||| || | ||  ||| || ||| |  |||||||||||||||||||||||    
T  32889655 tgaaatctcactacccaaggtgtttac-aatgtttcccaaccca--aaaaaacctcactacaaagacactcaaccctaaagtt 32889734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 775526 - 775644
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || | ||||   |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  775526 gtgtggagcaaaggaagtggtaaccaatagataaagtgtctccaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcat 775624  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  775625 aatcaaagcaataaagataa 775644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 21536812 - 21536696
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  |||||||||||| ||| ||||||||||||| || | |||  |||||||||||||||||    
T  21536812 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaatcaacaacaacaa-aaatagacctaga-cttactgtagagcaacaccacaagcat 21536715  T
Q  189 attcaaagcaacaaagataa 208  Q
    |  |||||| ||||||||||    
T  21536714 agacaaagc-acaaagataa 21536696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 13598250 - 13598370
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaata--gacctagatctaagtgtgaagcaacaccacaagc 186  Q
    |||||||| ||| ||||| || |||||| ||| |||| ||  ||| |||||||| ||||||| |  |||||||||||||||||  || ||||||||||||    
T  13598250 gtgtggagtaaaggaagtggtaatcaat-agttaagtgtctccaaacaacaacaacaacaaaaacagacctagatctaagtgtagagaaacaccacaagc 13598348  T
Q  187 atattcaaagcaacaaagataa 208  Q
    ||| ||||||||| ||||||||    
T  13598349 ataatcaaagcaataaagataa 13598370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 17345502 - 17345429
Alignment:
Q  280 cacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacac 354  Q
    ||||||||||||| |||||||||||||||||||| | ||||| ||||||| | |||||| | |||||||||||||    
T  17345502 cacaaagaacaaaacctaatttctacccattttttaagtcacccacactc-ttaatgaatcttaagagaaaacac 17345429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 358
Target Start/End: Complemental strand, 35109531 - 35109443
Alignment:
Q  270 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 358  Q
    |||||||| ||||||||||||||| | ||||||||||||| |||||| ||||| ||||||||  |||||| |||| ||||||| ||||||    
T  35109531 gcttaaaagctcacaaagaacaaaccttaatttctacccaattttcaagtcacacacactca-caatgaatcctacgagaaaatactaaa 35109443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 27104553 - 27104497
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||| ||||||||||  |||||||||||||||||| ||||||||| ||||||||    
T  27104553 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataa 27104497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 208
Target Start/End: Complemental strand, 47103087 - 47102966
Alignment:
Q  85 agacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaa 184  Q
    |||||||||||||||| ||||| || ||||||   |||||| ||   || |||||||| |||  || ||||||| ||||||||||  |||||||||||||    
T  47103087 agacgtgtggagcaaatgaagtggtaatcaatagataaagtgtctcaaagcaacaacaacaa--aacagacctaaatctaagtgtagagcaacaccacaa 47102990  T
Q  185 gcatattcaaagcaacaaagataa 208  Q
    | ||| ||||||||| ||||||||    
T  47102989 gtataatcaaagcaataaagataa 47102966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 47704181 - 47704061
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||   |||||| ||  ||| || ||||| ||| ||||||||||| ||||||||||  ||||||||||||||      
T  47704181 gtgtggagcaaaaggaagtggtaatcaatagataaagtgtctccaagcagcaacaacaaaaaatagacctaaatctaagtgtagagcaacaccacaagtt 47704082  T
Q  188 tattcaaagcaacaaagataa 208  Q
    || ||||||||| ||||||||    
T  47704081 taatcaaagcaataaagataa 47704061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 16124760 - 16124642
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||| |||||| ||||| || |||||||| |||| | |   ||| |||||||| ||| ||| |||||||||||||| |||  ||||||||||||| |||    
T  16124760 gtgtgaagcaaaggaagtggtaatcaatgaataaaatgtgtccaagcaacaacaacaa-aaacagacctagatctaaatgtagagcaacaccacaaacat 16124662  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  16124661 aatcaaagcaataaagataa 16124642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 32736976 - 32736902
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 358  Q
    |||||||||| |||||||||||||||||||||| ||||   |||||||  |||||| ||||||||||||| |||||    
T  32736976 aaagaacaaaccctaatttctacccatttttcaagtcatcgacactca-caatgaatcctaagagaaaaccctaaa 32736902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 19072781 - 19072899
Alignment:
Q  90 tgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcata 189  Q
    |||||| |||| |||||||| ||||||   |||||| ||   || |||||||| ||| ||  ||||||| ||||||||||  ||||||||||||||||||    
T  19072781 tgtggaacaaaggaagtagtaatcaatagataaagtgtctcgaagcaacaacaacaaaaatcagacctaaatctaagtgtagagcaacaccacaagcata 19072880  T
Q  190 ttcaaagcaacaaagataa 208  Q
     ||||| ||| ||||||||    
T  19072881 atcaaaacaataaagataa 19072899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 19120671 - 19120789
Alignment:
Q  90 tgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcata 189  Q
    |||||| |||| |||||||| ||||||   |||||| ||   || |||||||| ||| ||  ||||||| ||||||||||  ||||||||||||||||||    
T  19120671 tgtggaacaaaggaagtagtaatcaatagataaagtgtctcgaagcaacaacaacaaaaatcagacctaaatctaagtgtagagcaacaccacaagcata 19120770  T
Q  190 ttcaaagcaacaaagataa 208  Q
     ||||| ||| ||||||||    
T  19120771 atcaaaacaataaagataa 19120789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 8281135 - 8281289
Alignment:
Q  48 ttgtgaattcagacaaataattataataataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaac 147  Q
    ||||||||||| || |||||| |||  |||| |||||||| |||| ||  ||| ||| |||| |||||||| |||||||   |||| ||||||||         
T  8281135 ttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaaatagtaatcaatgaataaagtagtctcaagcaacaaca----- 8281229  T
Q  148 aaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
     || |||||||||||||||| |||||||||| || |  |||| ||||||||||| ||||||    
T  8281230 -aacagacctagatctaagtatgaagcaacatcagacacataatcaaagcaacagagataa 8281289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 11032309 - 11032268
Alignment:
Q  274 aaaactcacaaagaacaaatcctaatttctacccatttttca 315  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  11032309 aaaactcacaaagaacaaaacataatttctacccatttttca 11032268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 918468 - 918428
Alignment:
Q  275 aaactcacaaagaacaaatcctaatttctacccatttttca 315  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  918468 aaactcacaaagaacaaaccataatttctacccatttttca 918428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 9024021 - 9023957
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||| | ||||| ||||||||||  |||||||||||||||||| |||| |||| ||||||||    
T  9024021 caacaaacatacctaaatctaagtgtatagcaacaccacaagcataatcaatgcaataaagataa 9023957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 10996862 - 10996926
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||||| |||| |  ||||||||||||||||||||| ||| ||||| |||||| |||||||    
T  10996862 caacaaatagtcctaaaattaagtgtgaagcaacaccacatgcagattcatagcaacgaagataa 10996926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 412
Target Start/End: Complemental strand, 40816793 - 40816668
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    |||||||||  |||||||||||| ||||| |   ||||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  40816793 aaagaacaagacctaatttctactcatttgt---gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 40816698  T
Q  383 atgaaatttcactacccaaggtgtttacaa 412  Q
     |||||| ||||||||||||||||||||||    
T  40816697 gtgaaatctcactacccaaggtgtttacaa 40816668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 47099005 - 47098949
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||| ||||||||||  |||||||||||||| ||| ||||||||| ||||||||    
T  47099005 agacctaaatctaagtgtagagcaacaccacaagtataatcaaagcaataaagataa 47098949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 3019839 - 3019921
Alignment:
Q  275 aaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 358  Q
    ||||||||||||||||  | |||||||||||| |||||||| |||||||| || || ||||||| ||| | |||||||| ||||    
T  3019839 aaactcacaaagaacattttctaatttctaccaatttttcaagtcactcaaaccca-aaatgaatcctgatagaaaacaataaa 3019921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 26645140 - 26645024
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| || | || |||||||| ||| ||  ||||||||| || |||||  |||||||||||||||||    
T  26645140 gtgtggagcaaatgaagtggtaatcaatgtgtaaagtgtctttaagcaacaacaacaa-aagcagacctaga-cttagtgtagagcaacaccacaagcat 26645043  T
Q  189 attcaaagcaacaaagataa 208  Q
    |  |||||| ||||||||||    
T  26645042 aaacaaagc-acaaagataa 26645024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 11031433 - 11031320
Alignment:
Q  304 acccatttttcacgtcactcacactcataaatgaaccctaagagaaaa-cactaaatgannnnnnnnnatccttccaataatgaaatttcactacccaag 402  Q
    |||||||||||| |||| ||||||||| || || | |||||||||||| ||||||| ||         ||||||||||||||||| |  ||||||||| |    
T  11031433 acccatttttcaagtcattcacactcacaa-tgtatcctaagagaaaaacactaaaggaagctttttgatccttccaataatgaact--cactacccacg 11031337  T
Q  403 gtgtttacaaatgtttc 419  Q
    |||||||||||||||||    
T  11031336 gtgtttacaaatgtttc 11031320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 412
Target Start/End: Original strand, 22819541 - 22819676
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagag--aaaacactaaatgannnnnnnnnatcct 375  Q
    ||||||||||| ||  | ||||||||| |||||||||| ||||| ||||||| | |||||| ||||||||  ||||||| ||| ||         |||||    
T  22819541 ctcacaaagaataagacataatttctaaccatttttcaagtcacccacactc-tcaatgaatcctaagagaaaaaacacaaaaggaagctttttgatcct 22819639  T
Q  376 tccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    ||||||  |||||| | ||||||||||||||||||||    
T  22819640 tccaatggtgaaatgtaactacccaaggtgtttacaa 22819676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 3281911 - 3281952
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  3281911 atccttccaatggtgaaatctcactacccaaggtgtttacaa 3281952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 10997071 - 10997120
Alignment:
Q  281 acaaagaacaaatcctaatttctacccatttttcacgtcactcacactca 330  Q
    ||||| |||||| |||||||||||||||||||||| ||||| | ||||||    
T  10997071 acaaataacaaaccctaatttctacccatttttcaagtcaccctcactca 10997120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 467
Target Start/End: Original strand, 10997173 - 10997263
Alignment:
Q  381 taatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaat----aaactctcaccaaagacactcaaccctaaagttc 467  Q
    |||||| ||||||||| |||||||||||| ||||||||| || |  |||||||    |||||||||||| | ||||||| || ||||||||    
T  10997173 taatgacatttcactatccaaggtgtttaaaaatgtttcccaacctaagaaattaagaaactctcaccacatacactcagccttaaagttc 10997263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 13598604 - 13598645
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  13598604 atccttccaatggtgaaatctcactacccaaggtgtttacaa 13598645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 13604515 - 13604474
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  13604515 atccttccaatggtgaaatctcactacccaaggtgtttacaa 13604474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 16124407 - 16124366
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  16124407 atccttccaatggtgaaatctcactacccaaggtgtttacaa 16124366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 19358734 - 19358693
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19358734 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19358693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 19361323 - 19361282
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19361323 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19361282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 19366199 - 19366158
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19366199 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19366158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 19379963 - 19379922
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  19379963 atccttccaatggtgaaatctcactacccaaggtgtttacaa 19379922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 29652017 - 29652058
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  29652017 atccttccaatggtgaaatctcactacccaaggtgtttacaa 29652058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 35109724 - 35109663
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaaga 205  Q
    ||||||| ||||||||||||||||| | | ||||||||||| |||| | |||| ||||||||    
T  35109724 caacaaacagacctagatctaagtgcggaacaacaccacaaacataattaaagaaacaaaga 35109663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 283 - 466
Target Start/End: Complemental strand, 23402993 - 23402814
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||| ||| ||         ||| |||||||     
T  23402993 aaagaacaagtcctaatttctacccatttttcacatcactcacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatcattccaatg 23402895  T
Q  383 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  23402894 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcactacaaagacactcaaccctaaagtt 23402814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 28617471 - 28617334
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaa-tagacctagatctaagtgtgaa-gcaacaccacaagc 186  Q
    |||||||||||| ||||| || |||||||||||||||| | ||||  ||||| | ||||||| ||||||||  ||| || || || ||||||||||||||    
T  28617471 gtgtggagcaaaggaagtggtaatcaatgagtaaagtagcctcaagaaacaagaacaacaaaatagacctaagtcttagagtaaaagcaacaccacaagc 28617372  T
Q  187 atattcaaagcaacaaagataattaagagaggaagaaa 224  Q
    ||||||||||||||||||||||  |||| |||||||||    
T  28617371 atattcaaagcaacaaagataagcaagaaaggaagaaa 28617334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 466
Target Start/End: Original strand, 20284206 - 20284385
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    ||||||||| ||||||||||||||| |||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  20284206 aaagaacaagtcctaatttctacccttttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 20284304  T
Q  383 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
     |||||| |||||||||||||||||||| |||||||| || | ||||  | || ||| |  |||||||||||||||||||||||    
T  20284305 gtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaag--agaacctcactacaaagacactcaaccctaaagtt 20284385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 278 - 412
Target Start/End: Complemental strand, 5817255 - 5817122
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 377  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||||||||| | |||||| ||||||| ||||||| ||| ||         |||||||    
T  5817255 ctcacaaagaacaaaacctaatttctatccatttttcaagtcactcacactc-tcaatgaatcctaagaaaaaacacaaaaggaagctttttgatccttc 5817157  T
Q  378 caataatgaaatttcactacccaaggtgtttacaa 412  Q
    ||||  |||||| ||||| |||||||| |||||||    
T  5817156 caatggtgaaatctcactccccaaggtatttacaa 5817122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 284 - 412
Target Start/End: Complemental strand, 9185153 - 9185026
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 383  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| |||||||||||||||  || ||         |||||||||||      
T  9185153 aagaacaagtcctaatttctacccatttttcatatcacccacactc-ttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatgg 9185055  T
Q  384 tgaaatttcactacccaaggtgtttacaa 412  Q
    |||||| ||||||||||||||||||||||    
T  9185054 tgaaatctcactacccaaggtgtttacaa 9185026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 284 - 412
Target Start/End: Complemental strand, 9189986 - 9189859
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 383  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| |||||||||||||||  || ||         |||||||||||      
T  9189986 aagaacaagtcctaatttctacccatttttcatatcacccacactc-ttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatgg 9189888  T
Q  384 tgaaatttcactacccaaggtgtttacaa 412  Q
    |||||| ||||||||||||||||||||||    
T  9189887 tgaaatctcactacccaaggtgtttacaa 9189859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 20283943 - 20284061
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||||||||||||  | |||||||  |||||| ||  |||  ||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  20283943 gtgtggagcaaaagaagtgataatcaatggataaagtgtctccaagaaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcat 20284041  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  20284042 aatcaaagcaataaagataa 20284061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 412
Target Start/End: Original strand, 2580508 - 2580635
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 383  Q
    |||||||| ||||| |||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||| ||||      
T  2580508 aagaacaagtcctagtttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatgg 2580606  T
Q  384 tgaaatttcactacccaaggtgtttacaa 412  Q
    |||||| ||||||||||||||||||||||    
T  2580607 tgaaatctcactacccaaggtgtttacaa 2580635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 9185406 - 9185288
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||| ||||||| ||  ||| |||||||| |||  || ||||||||||||||||||  || |||||||||||||    
T  9185406 gtgtggagcaaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa--aacagacctagatctaagtgtagagaaacaccacaagca 9185309  T
Q  188 tattcaaagcaacaaagataa 208  Q
    ||  |||||||| ||||||||    
T  9185308 taaacaaagcaataaagataa 9185288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 9190251 - 9190133
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||| ||||||| ||  ||| |||||||| |||  || | ||||||||||||||||  ||||||||||||||||    
T  9190251 gtgtggagcaaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa--aacaaacctagatctaagtgtagagcaacaccacaagca 9190154  T
Q  188 tattcaaagcaacaaagataa 208  Q
    ||  |||||||| ||||||||    
T  9190153 taaacaaagcaataaagataa 9190133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 9235800 - 9235680
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaat-agacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||| ||||| || |||||||  |||||| ||  ||| |||||||| ||| |||  ||||||| |||||| |||  ||||||||||||||||    
T  9235800 gtgtggagcaaaggaagtggtaatcaatggataaagtgtctccaagcaacaacaacaaaaaaacagacctaaatctaaatgtagagcaacaccacaagca 9235701  T
Q  188 tattcaaagcaacaaagataa 208  Q
    || ||||||||| ||||||||    
T  9235700 taatcaaagcaataaagataa 9235680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 2647940 - 2647821
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||| | || ||||||   |||| ||||  ||| |||||||| ||| ||| ||||||| |||||||| |  |||||||||||||||||    
T  2647940 gtgtggagcaaaggaaatggtaatcaatagataaaatatctccaaacaacaacaacaaaaaacagacctaaatctaagtttagagcaacaccacaagcat 2647841  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  2647840 aatcaaagcaataaagataa 2647821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 46516554 - 46516435
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| |||| || |||||||||| ||||||||||| ||||||    
T  46516554 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaaacaacaacaacaaaaaacagacttaaatctaagtgtaaagcaacaccaaaagcat 46516455  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| | ||||||    
T  46516454 aatcaaagcaatagagataa 46516435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 49091516 - 49091633
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| |||||||||| |||||||  |||||||||||||||||    
T  49091516 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaacagacctagatttaagtgtagagcaacaccacaagcat 49091614  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||| ||||||||||    
T  49091615 aatcaaagc-acaaagataa 49091633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 4796913 - 4796792
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaata--gacctagatctaagtgtgaagcaacaccacaagc 186  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| |  |||||| ||||||||||  |||||||||||||||    
T  4796913 gtgtggagcaaaggaagtggtaatcaatagataaagtttctccaagcaacaacaacaaaaaaaacagacctaaatctaagtgtagagcaacaccacaagc 4796814  T
Q  187 atattcaaagcaacaaagataa 208  Q
    ||| ||||||||| ||||||||    
T  4796813 ataatcaaagcaataaagataa 4796792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 400 - 470
Target Start/End: Original strand, 27984678 - 27984747
Alignment:
Q  400 aaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 470  Q
    ||||| ||||||||| ||||||||| ||||||| ||||||||||||||||||| ||  |||||||||||||    
T  27984678 aaggtttttacaaatatttctcatcccaagaaa-aaactctcaccaaagacacccagtcctaaagttctct 27984747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 29159703 - 29159775
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||| ||||||||| ||||||||    
T  29159703 caacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataa 29159775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 466
Target Start/End: Complemental strand, 46516198 - 46516106
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || ||||||| ||   ||| |  |||||||||||||||||||||||    
T  46516198 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaactcaagagat--cctcactacaaagacactcaaccctaaagtt 46516106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 21988760 - 21988879
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||| ||| |||||||| |||     ||||||| ||||  ||||  ||||||||||||| |||    
T  21988760 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtcaccaagcaacaacaacaaactccagacctaaatctgggtgtagagcaacaccacaaacat 21988859  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  21988860 aatcaaagcaataaagataa 21988879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 412
Target Start/End: Complemental strand, 9235562 - 9235434
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    ||||||||| |||||||||||||||||||||||  |||| | ||||| | || ||| ||||||||||||||| ||| ||         |||||| ||||     
T  9235562 aaagaacaagtcctaatttctacccatttttcatatcacccgcactc-tcaacgaatcctaagagaaaacacaaaaggaagctttttgatccttgcaatg 9235464  T
Q  383 atgaaatttcactacccaaggtgtttacaa 412  Q
     |||||| |||||| |||||||||||||||    
T  9235463 gtgaaatatcactatccaaggtgtttacaa 9235434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 412
Target Start/End: Original strand, 29159922 - 29160050
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    ||||||||  ||||||||||||||||||||   ||||| ||| |||| || ||||| ||||||||||||||| ||| ||         |||||||||||     
T  29159922 aagaacaagacctaatttctacccatttttgt-gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatg 29160020  T
Q  383 atgaaatttcactacccaaggtgtttacaa 412  Q
     |||||| ||||||||||||||||||||||    
T  29160021 ttgaaatctcactacccaaggtgtttacaa 29160050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 402
Target Start/End: Original strand, 3047367 - 3047489
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 377  Q
    ||||||||||||||  |||||||||||||||||||| | ||||| ||||||| | |||||| | ||||| ||||||| ||| ||         |||||||    
T  3047367 ctcacaaagaacaagacctaatttctacccattttt-aagtcacccacactc-tcaatgaatcttaagataaaacacaaaaggaagctttttgatccttc 3047464  T
Q  378 caataatgaaatttcactacccaag 402  Q
    |||| ||||||| ||||||||||||    
T  3047465 caatgatgaaatctcactacccaag 3047489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 55864 - 55919
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||||||||||| |  |||||||||||||||||| ||||||| ||||||||||    
T  55864 agacctagatctaagtatagagcaacaccacaagcataatcaaagc-acaaagataa 55919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 2479193 - 2479308
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||   || |||||||| ||| ||| |||||||| ||| |||||  |||||||||||||||||    
T  2479193 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctctaagcaacaacaacaa-aaacagacctag-tct-agtgtagagcaacaccacaagcat 2479289  T
Q  189 attcaaagcaacaaagataa 208  Q
    || ||||| |||||||||||    
T  2479290 atacaaag-aacaaagataa 2479308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 23403256 - 23403138
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| |||||  | |||||||  |||||| |   ||| |||||||| ||| ||| ||||||| || |||||||  |||||||||||||||||    
T  23403256 gtgtggagcaaaggaagtgataatcaatggataaagtgtttccaagcaacaacaacaa-aaacagacctaaatgtaagtgtagagcaacaccacaagcat 23403158  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||| ||||    
T  23403157 aatcaaagcaataaatataa 23403138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 24526017 - 24526051
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttt 312  Q
    ||||||||||||||| |||||||||||||||||||    
T  24526017 ctcacaaagaacaaaacctaatttctacccatttt 24526051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 28617219 - 28617173
Alignment:
Q  270 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttca 315  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  28617219 gcttaaaagctcacaaagaacaaaacctaatttctacctatttttca 28617173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 56153 - 56194
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  56153 atccttccaatggtgaaatctcactacccaaggtgtttacaa 56194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 2479540 - 2479581
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  2479540 atccttccaatggtgaaatctcactacccaaggtgtttacaa 2479581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 4162756 - 4162699
Alignment:
Q  276 aactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataa 333  Q
    ||||||||||||||||||| ||||||||||  |||||||| |||| ||| || |||||    
T  4162756 aactcacaaagaacaaatcataatttctacttatttttcaagtcattcaaacccataa 4162699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 4796561 - 4796520
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  4796561 atccttccaatggtgaaatctcactacccaaggtgtttacaa 4796520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 21640014 - 21640055
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21640014 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21640055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 21646212 - 21646253
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21646212 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21646253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 21983490 - 21983531
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  21983490 atccttccaatggtgaaatctcactacccaaggtgtttacaa 21983531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 8140992 - 8140952
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaa 115  Q
    ||||||||| ||| ||||||||||||||||||||| |||||    
T  8140992 aataaaactaagatgtgtggagcaaaagaagtagtaatcaa 8140952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 18413844 - 18413884
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttaca 411  Q
    |||||||||||  |||||| |||||||||||||||||||||    
T  18413844 atccttccaatggtgaaatctcactacccaaggtgtttaca 18413884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 21983139 - 21983255
Alignment:
Q  92 tggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatatt 191  Q
    ||||||||| ||||| || ||||||| ||||||||||  ||| |||||||| |||     ||||||| ||||  ||||  ||||||||||||| |||| |    
T  21983139 tggagcaaatgaagtggtaatcaatgtgtaaagtatctccaagcaacaacaacaaactccagacctaaatctgggtgtagagcaacaccacaaacataat 21983238  T
Q  192 caaagcaacaaagataa 208  Q
    |||||||| | ||||||    
T  21983239 caaagcaatagagataa 21983255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 27984411 - 27984459
Alignment:
Q  160 atctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||||||||||||| | ||||| |||||| |||| |||||||||||    
T  27984411 atctaagtgtgaagcaataacacaaacatatttaaagaaacaaagataa 27984459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 279 - 462
Target Start/End: Complemental strand, 31513314 - 31513135
Alignment:
Q  279 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttcc 378  Q
    |||||||||||||| ||||||||||||| |||||  | ||||  |||||||| || |||| ||||||||||||||||||| ||         ||||||||    
T  31513314 tcacaaagaacaaa-cctaatttctacctattttcga-gtcatccacactcacaa-tgaatcctaagagaaaacactaaa-gatttttttttatccttcc 31513219  T
Q  379 aataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaa 462  Q
      ||||||||| ||||||  |||||||||||||||||||||||| | ||||||||||||||||| | ||||||||| |||||||    
T  31513218 tctaatgaaatctcactattcaaggtgtttacaaatgtttctcaacccaagaaataaactctcatcgaagacactcgaccctaa 31513135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 5990816 - 5990685
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagc 174  Q
    ||||||||  ||| ||| |||||||| |||||||| |||||||  ||||||| |||||| ||||||||   ||||||||||||| ||||||||||  | |    
T  5990816 aataaaacaaagatgtgcggagcaaaggaagtagtaatcaatggataaagtagcatcaagcaacaaca---acaaatagacctaaatctaagtgtagaac 5990720  T
Q  175 aacaccacaagcatattc-aaagcaacaaagataa 208  Q
    || ||||||||||||||| ||||||||||||||||    
T  5990719 aaaaccacaagcatattcaaaagcaacaaagataa 5990685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 470
Target Start/End: Original strand, 3051232 - 3051420
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 377  Q
    ||||||||||||||| | |||||||||||||||||||| |||||| |||||| | |||||| ||||||||||| ||| ||| ||         ||| |||    
T  3051232 ctcacaaagaacaaaacttaatttctacccatttttcatgtcacttacactc-tcaatgaatcctaagagaaagcacaaaaggaagctttttgatctttc 3051330  T
Q  378 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttctct 470  Q
    ||||  |||||| |||||||||||| ||||||| |||||||| || ||||||  | || | | |  |||||||||||||||||||||||||||    
T  3051331 caatggtgaaatctcactacccaagatgtttac-aatgtttcccaactcaag--agaaccccactacaaagacactcaaccctaaagttctct 3051420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 412
Target Start/End: Complemental strand, 19752372 - 19752246
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 383  Q
    |||||||| |||||||||||||||||||||||  |||| ||||||| | |||||| ||||||||||||||| ||| ||         ||||||||||| |    
T  19752372 aagaacaagtcctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacac-aaaggaagctttttgatccttccaatga 19752275  T
Q  384 tgaaatttcactacccaaggtgtttacaa 412  Q
    |||||| ||||||||||||||||||||||    
T  19752274 tgaaatctcactacccaaggtgtttacaa 19752246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 285 - 468
Target Start/End: Complemental strand, 8863604 - 8863425
Alignment:
Q  285 agaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataat 384  Q
    |||||||| | |||||||||||||||||||| ||||||||||| |||||||||| |  ||||||||||| |||| ||         |||||   ||||||    
T  8863604 agaacaaaccttaatttctacccatttttcaagtcactcacacacataaatgaatctaaagagaaaacattaaagga-agattttaatcct---aataat 8863509  T
Q  385 gaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttct 468  Q
    ||||| |||||| |||| |||||||||| ||||||  | |  |||||||||| | ||||| ||||||||||| | |||||||||    
T  8863508 gaaatctcactaaccaatgtgtttacaactgtttcctagcctaagaaataaattttcaccgaagacactcaaacttaaagttct 8863425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 9054820 - 9054748
Alignment:
Q  280 cacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaaca 353  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||    
T  9054820 cacaaagaacaaaatctaatttctacccatttttcaagtcactcacactc-tcaatgaatcctaagagaaaaca 9054748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 5702726 - 5702608
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || |||||||| |||||| ||  | | |||||||| ||| ||| ||||||||||||||||||  |||| ||||||||||||    
T  5702726 gtgtggagcaaatgaagtggtaatcaatgaataaagtgtctcctagcaacaacaacaa-aaacagacctagatctaagtgtagagcatcaccacaagcat 5702628  T
Q  189 attcaaagcaacaaagataa 208  Q
    | | ||||||| | ||||||    
T  5702627 aattaaagcaatagagataa 5702608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 412
Target Start/End: Complemental strand, 7493158 - 7493025
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 377  Q
    |||||| |||||||| |||||||||||||  ||||||| ||||| ||||||| | ||| || ||||||| ||||||||||| ||         |||||||    
T  7493158 ctcacacagaacaaaacctaatttctacctgtttttcaagtcacccacactc-tcaataaatcctaagaaaaaacactaaaggaagctttttgatccttc 7493060  T
Q  378 caataatgaaatttcactacccaaggtgtttacaa 412  Q
     |||  |||||| ||||||||||||||||||||||    
T  7493059 taattgtgaaatctcactacccaaggtgtttacaa 7493025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 26403411 - 26403355
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||| ||||||||||  |||||||||||||||||| ||||||||| ||||||||    
T  26403411 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataa 26403355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 9766063 - 9765945
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| |||||  | ||||||   |||||| ||  ||| |||||||| ||| ||| | ||||| ||||||||||  |||||||||||||||||    
T  9766063 gtgtggagcaaaggaagtgataatcaatagataaagtgtctccaagcaacaacaacaa-aaacaaacctaaatctaagtgtagagcaacaccacaagcat 9765965  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  9765964 aatcaaagcaataaagataa 9765945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 6813795 - 6813845
Alignment:
Q  278 ctcacaaagaacaaatcctaattt-ctacccatttttcacgtcactcacac 327  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  6813795 ctcacaaagaacaaaacctaattttctacccatttttcaagtcactcacac 6813845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 11771857 - 11771927
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataattaaga 214  Q
    ||||||| | |||||||||||||| ||||||||||||| |||||||   ||| ||||||||||||| ||||    
T  11771857 caacaaacatacctagatctaagtatgaagcaacaccaaaagcataacaaaaacaacaaagataataaaga 11771927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 28307428 - 28307534
Alignment:
Q  102 gaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaaca 201  Q
    |||||||| |||||||||| ||||| | ||||  ||| ||| ||||||||| ||||| ||||||||||  | || |||||||||||||  |||||||| |    
T  28307428 gaagtagtaatcaatgagtcaagtagcctcaagtaacgacaacaacaaataaacctaaatctaagtgtataacagcaccacaagcataaacaaagcaata 28307527  T
Q  202 aagataa 208  Q
    || ||||    
T  28307528 aatataa 28307534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 19175647 - 19175606
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  19175647 atccttccaatagtgaaatctcactacccaaggtgtttacaa 19175606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 28387898 - 28387955
Alignment:
Q  152 agacctagatctaagtgtgaagcaaca-ccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||||||||||||||||||||| | | ||||||||| | ||||||||||||||||    
T  28387898 agacctagatctaagtgtgaagcaaaatcaacaagcataatgaaagcaacaaagataa 28387955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 466
Target Start/End: Original strand, 7412544 - 7412636
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
    |||||| ||||  |||||| |||||||||||||||||||||| |||||| || | ||||| ||   |||||  |||||||||||||||||||||||    
T  7412544 atcctttcaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaagagatc--ctctctacaaagacactcaaccctaaagtt 7412636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 7493325 - 7493210
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatca------acaacatcaacaaatagacctagatctaagtg 168  Q
    |||||||||  || |||||||||||| |||||||| ||||||| ||||||||   |||| ||      |||||| ||||||||||| ||| |||||||||    
T  7493325 aataaaactatgatgtgtggagcaaaggaagtagtaatcaatgtgtaaagtagtctcaagcagcagcaacaacaacaacaaatagatctaaatctaagtg 7493226  T
Q  169 tgaagcaacaccacaa 184  Q
    |  |||||||||||||    
T  7493225 tagagcaacaccacaa 7493210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 412
Target Start/End: Complemental strand, 26403208 - 26403081
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataa-atgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    ||||||||  |||||||||||||||||||    ||||||||| |||| || ||||| | ||||||||||||| ||| ||         |||||||||||     
T  26403208 aagaacaagacctaatttctacccattttgt--gtcactcactctcacaatatgaatcataagagaaaacacaaaaggaagctttttgatccttccaatg 26403111  T
Q  383 atgaaatttcactacccaaggtgtttacaa 412  Q
     |||||| ||||||||||||||||||||||    
T  26403110 gtgaaatctcactacccaaggtgtttacaa 26403081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 30291654 - 30291620
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttt 312  Q
    ||||||||||||||| |||||||||||||||||||    
T  30291654 ctcacaaagaacaaaacctaatttctacccatttt 30291620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 4696793 - 4696721
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||| ||| ||| |||| || ||||||||||  ||||||||||||| |||| ||||||||| ||||||||    
T  4696793 caacaacaacaa-aaacagacataaatctaagtgtagagcaacaccacaaacataatcaaagcaataaagataa 4696721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 358
Target Start/End: Complemental strand, 5990555 - 5990467
Alignment:
Q  270 gcttaaaa-ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 358  Q
    |||||||| |||||||||||||   ||| ||||  |||||||||||| ||||| ||||||  | |||||| |||||||||||||||||||    
T  5990555 gcttaaaagctcacaaagaacacgacctcattttcacccatttttcaagtcacccacactt-tcaatgaatcctaagagaaaacactaaa 5990467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 8863824 - 8863755
Alignment:
Q  139 aacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||| ||||||| | ||||| | ||| ||||||| |||||||||||  ||||||||||||||||| ||||    
T  8863824 aacaacaacaaagaaacctacacctatgtgtgaaacaacaccacaaatatattcaaagcaacaaatataa 8863755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 466
Target Start/End: Original strand, 11712237 - 11712266
Alignment:
Q  437 ctctcaccaaagacactcaaccctaaagtt 466  Q
    ||||||||||||||||||||||||||||||    
T  11712237 ctctcaccaaagacactcaaccctaaagtt 11712266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 19752637 - 19752519
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||   |||||| ||  ||| |||||||| |||  || ||||||| ||||||||||   |||||||||||||||    
T  19752637 gtgtggagcaaaaggaagtggtaatcaatatataaagtgtctccaagcaacaacaacaa--aacagacctaaatctaagtgtagtgcaacaccacaagca 19752540  T
Q  188 tattcaaagcaacaaagataa 208  Q
    || ||||||||| | ||||||    
T  19752539 taatcaaagcaatagagataa 19752519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 26288096 - 26288137
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  26288096 atccttccaatggtgaaatctcactacccaaggtgtttacaa 26288137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 26301353 - 26301394
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  26301353 atccttccaatggtgaaatctcactacccaaggtgtttacaa 26301394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 26313347 - 26313388
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  26313347 atccttccaatggtgaaatctcactacccaaggtgtttacaa 26313388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 31071120 - 31071079
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  31071120 atccttccaatggtgaaatctcactacccaaggtgtttacaa 31071079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 23799774 - 23799702
Alignment:
Q  136 aacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||| ||| ||||||||||||||||||||||  || |  ||||||| |||| ||||||||| | ||||||    
T  23799774 aacaacaacaaaaaatagacctagatctaagtgtagagaagtaccacaaacataatcaaagcaatagagataa 23799702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 42093168 - 42093128
Alignment:
Q  275 aaactcacaaagaacaaatcctaatttctacccatttttca 315  Q
    |||||||||||||||| ||| ||||||||||| ||||||||    
T  42093168 aaactcacaaagaacatatcataatttctacctatttttca 42093128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 279 - 467
Target Start/End: Complemental strand, 30518112 - 30517922
Alignment:
Q  279 tcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttcc 378  Q
    |||||||||||||| | ||||||||||| |||||||| || || |||||||| ||||||| | || |||||||||||||| ||         ||||||||    
T  30518112 tcacaaagaacaaaccttaatttctacctatttttcaagttacccacactcacaaatgaatctta-gagaaaacactaaaggaagtttttg-atccttcc 30518015  T
Q  379 aataatgaaat----ttcactacccaaggtgtttacaaatgttt-ctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 467  Q
    |||||||||||     |||||||||||  | ||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||||||||    
T  30518014 aataatgaaatctcactcactacccaaaatatttacaaatgtttcctaatct-aagaaataaactctcaccaaagacactcaactctaaagttc 30517922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 274 - 419
Target Start/End: Complemental strand, 33721548 - 33721404
Alignment:
Q  274 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatc 373  Q
    |||||||| |||||||||| ||||||||   ||||||||| | ||||| ||||||| |||||||| ||||||||||||||||||| |          |||    
T  33721548 aaaactcataaagaacaaaacctaattttcccccattttttaggtcacacacactcctaaatgaatcctaagagaaaacactaaagggagctttttcatc 33721449  T
Q  374 cttccaataatgaaatttcactacccaaggtgtttacaaatgtttc 419  Q
     ||||||||||||||| |||||| | ||||||||||||||||||||    
T  33721448 attccaataatgaaatctcacta-caaaggtgtttacaaatgtttc 33721404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 33721800 - 33721684
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||| |||| |||||||| ||| ||||||||||||   |||| ||||||||   ||||| |  |||||||||||||||||| || |||||||| |||    
T  33721800 gtgtggaacaaaggaagtagtaatcgatgagtaaagtagtttcaagcaacaaca---acaaacatccctagatctaagtgtgaaacatcaccacaaacat 33721704  T
Q  189 attcaaagcaacaaagataa 208  Q
    ||||||||||||||||||||    
T  33721703 attcaaagcaacaaagataa 33721684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 22963553 - 22963672
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||| || ||||| || |||||| | |||||| ||  ||| |||||||| ||| ||| ||||||||||||||||||  |||||||||||||||||    
T  22963553 gtgtggagctaaggaagtggtaatcaattaataaagtgtctccaagcaacaacaacaaaaaacagacctagatctaagtgtagagcaacaccacaagcat 22963652  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| | ||||||    
T  22963653 aatcaaagcaatagagataa 22963672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 23824840 - 23824721
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||| || ||||| || |||||| | |||||| ||  ||| |||||||| ||| ||| ||||||||||||||||||  |||||||||||||||||    
T  23824840 gtgtggagctaaggaagtggtaatcaattaataaagtgtctccaagcaacaacaacaaaaaacagacctagatctaagtgtagagcaacaccacaagcat 23824741  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| | ||||||    
T  23824740 aatcaaagcaatagagataa 23824721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 207
Target Start/End: Complemental strand, 1115358 - 1115229
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagc 174  Q
    |||||||||||||  | ||||| |||||||||||| ||||||||| |||||| | |||| ||||||   |||||||||||| |||||||  ||||||||     
T  1115358 aataaaacttagatatatggagtaaaagaagtagtaatcaatgagcaaagtagcttcaagcaacaa---caacaaatagacatagatctctgtgtgaagt 1115262  T
Q  175 aacaccacaagcatattcaaagcaacaaagata 207  Q
    |||||||||  | |||| ||| |||||||||||    
T  1115261 aacaccacagtcttatttaaaccaacaaagata 1115229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 412
Target Start/End: Original strand, 31936695 - 31936820
Alignment:
Q  284 aagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataa 383  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||| | |||||| |||||||||||||||  || ||         |||||||||||      
T  31936695 aagaacaaatcctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacac--aaagaagctttttgatccttccaatgg 31936791  T
Q  384 tgaaatttcactacccaaggtgtttacaa 412  Q
    |||||| ||||||||||||||||||||||    
T  31936792 tgaaatctcactacccaaggtgtttacaa 31936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 412
Target Start/End: Original strand, 14521785 - 14521919
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 377  Q
    ||||||||||||| | |||||||||||| ||||||||| ||||| ||||||| | ||| || |||||||||||||| |||| ||         |||||||    
T  14521785 ctcacaaagaacacaacctaatttctacacatttttcatgtcacccacactc-tcaataaatcctaagagaaaacattaaaggaagattttttatccttc 14521883  T
Q  378 caataatgaaatt-tcactacccaaggtgtttacaa 412  Q
    ||||  ||||||| ||||||||||||||||||||||    
T  14521884 caatggtgaaattctcactacccaaggtgtttacaa 14521919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 10077408 - 10077290
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  10077408 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacaccacaagcat 10077310  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  10077309 aatcaaagcaataaagataa 10077290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 31979367 - 31979485
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| || |||| |||||||| ||| ||| ||||||| ||||||||||  ||||||| |||||||||    
T  31979367 gtgtggagcaaaggaagtggtaatcaatagataaagtgtcttcaagcaacaacaacaa-aaacagacctaaatctaagtgtagagcaacatcacaagcat 31979465  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  31979466 aatcaaagcaataaagataa 31979485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 466
Target Start/End: Complemental strand, 24435939 - 24435773
Alignment:
Q  294 cctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaataatgaaatttca 393  Q
    |||||||||||||||||||| |  |||| |||| |||||| |||| ||||||||||||||| ||| ||         |||||||||||  |||||| |||    
T  24435939 cctaatttctacccattttt-atatcacccacattcataa-tgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctca 24435842  T
Q  394 ctacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
    ||||||||||||||||| |||||||| || ||||||  | || ||| || |||||||||||||||||||||||    
T  24435841 ctacccaaggtgtttac-aatgtttcccaactcaag--agaacctcaca-caaagacactcaaccctaaagtt 24435773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 283 - 466
Target Start/End: Original strand, 31979631 - 31979808
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    |||||||||  ||||||||||||||||||||   ||||| ||||||| | |||||| ||||||||||||||| ||| ||         |||||||||||     
T  31979631 aaagaacaagacctaatttctacccatttttgt-gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagcttttg-atccttccaatg 31979727  T
Q  383 atgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagtt 466  Q
     |||||| |||||||||||||||||||| ||||||||||| | ||  ||| || ||| |  |||||||||||||||||||||||    
T  31979728 gtgaaatctcactacccaaggtgtttac-aatgtttctcaaccca--aaagaacctcactacaaagacactcaaccctaaagtt 31979808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 18232699 - 18232817
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||| |||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| | ||||||||||||||||  |||||||||||||||||    
T  18232699 gtgtgaagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacaacaa-aaacaaacctagatctaagtgtagagcaacaccacaagcat 18232797  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  18232798 aatcaaagcaataaagataa 18232817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 21355892 - 21356007
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| || |||| |||||||| ||| ||| |||||||| ||| |||||  |||||||||||||||||    
T  21355892 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtcttcaagcaacaacaacaa-aaacagacctag-tct-agtgtagagcaacaccacaagcat 21355988  T
Q  189 attcaaagcaacaaagataa 208  Q
    || ||||| |||||||||||    
T  21355989 atacaaag-aacaaagataa 21356007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 412
Target Start/End: Complemental strand, 21801323 - 21801196
Alignment:
Q  283 aaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttccaata 382  Q
    |||||||||  | |||||||||||||||||    ||||| |||||||  ||||||||||||||||||||||| ||| ||         |||||||||||     
T  21801323 aaagaacaagacttaatttctacccattttgt--gtcacccacactctcaaatgaaccctaagagaaaacacaaaaggaagctttttgatccttccaatg 21801226  T
Q  383 atgaaatttcactacccaaggtgtttacaa 412  Q
     |||||| ||||||||||||||||||||||    
T  21801225 ttgaaatctcactacccaaggtgtttacaa 21801196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 30519265 - 30519146
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    ||||||||||||  || |||| ||||||||  ||| ||   |||| |||||||| ||||||| | |  ||||| ||||||||||||||||||| || |||    
T  30519265 gtgtggagcaaagaaaatagtaatcaatgatcaaaatagtctcaaacaacaacaacaacaaacatatttagatttaagtgtgaagcaacaccataaacat 30519166  T
Q  189 attcaaagcaacaaagataa 208  Q
    ||| ||||||||||||||||    
T  30519165 atttaaagcaacaaagataa 30519146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 4629869 - 4629925
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||| ||||||||||  |||||||||||||||||| ||||||||| ||||||||    
T  4629869 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataa 4629925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 5017649 - 5017594
Alignment:
Q  152 agacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||||    
T  5017649 agacctagatctaagtgtagagcaacaccacaagcataatcaaagc-acaaagataa 5017594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 9036157 - 9036258
Alignment:
Q  132 aatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataattaag-agaggaagaaaccaaca 230  Q
    ||||||||||| ||||||| | | |||||||||||||||||||||  ||||||  ||| ||||| ||||||||||||  ||| |||| |||||| |||||    
T  9036157 aatcaacaacaacaacaaacatatctagatctaagtgtgaagcaa-tccacaattataatcaaaacaacaaagataagaaagaagagaaagaaaacaaca 9036255  T
Q  231 cac 233  Q
    |||    
T  9036256 cac 9036258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 28301143 - 28301089
Alignment:
Q  154 acctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||||| |||||||||||||||| |||| ||||||||||| |||| ||||||    
T  28301143 acctagatcgaagtgtgaagcaacactacaaacatattcaaagaaacagagataa 28301089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 28510930 - 28510984
Alignment:
Q  154 acctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||||| |||||||||||||||| |||| ||||||||||| |||| ||||||    
T  28510930 acctagatcgaagtgtgaagcaacactacaaacatattcaaagaaacagagataa 28510984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 31936441 - 31936559
Alignment:
Q  89 gtgtggagcaaaag-aagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagca 187  Q
    |||||||||||||| |||| || ||||||| ||||||| ||  ||| |||||||| |||  || ||||||  ||| ||||||  ||||||||||||||||    
T  31936441 gtgtggagcaaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa--aacagaccttaatcaaagtgtagagcaacaccacaagca 31936538  T
Q  188 tattcaaagcaacaaagataa 208  Q
    ||  |||||||| ||||||||    
T  31936539 taaacaaagcaataaagataa 31936559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 99000 - 99135
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagc 174  Q
    ||||||||||| |||||||||| ||| |||||||| ||||||||| ||||||   | || ||||||||     ||| | || || ||| |||||| |||     
T  99000 aataaaacttaaacgtgtggagtaaaggaagtagtaatcaatgagcaaagtagtcttaagcaacaaca-----aaacaaacatatatccaagtgtaaaga 99094  T
Q  175 aacaccacaagcatattcaaagcaacaaagataattaagag 215  Q
    |||||| ||| |||| ||||||||||||||| ||| |||||    
T  99095 aacaccgcaaacatactcaaagcaacaaagacaataaagag 99135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 5757719 - 5757604
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| ||||||| |||| |||||  |||||||||||||||||    
T  5757719 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagaccta-atct-agtgtagagcaacaccacaagcat 5757623  T
Q  189 attcaaagcaacaaagataa 208  Q
    |  ||||| |||||||||||    
T  5757622 aaacaaag-aacaaagataa 5757604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 16569081 - 16569047
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttt 312  Q
    ||||||||||||||| |||||||||||||||||||    
T  16569081 ctcacaaagaacaaaacctaatttctacccatttt 16569047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 21356244 - 21356282
Alignment:
Q  374 cttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  21356244 cttccaatgatgaaatctcactacccaaggtgtttacaa 21356282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 412
Target Start/End: Complemental strand, 5572132 - 5572095
Alignment:
Q  375 ttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  5572132 ttccaatagtgaaatctcactacccaaggtgtttacaa 5572095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 5757371 - 5757330
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  5757371 atccttccaatggtgaaatctcactacccaaggtgtttacaa 5757330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 18233050 - 18233091
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  18233050 atccttccaatggtgaaatctcactacccaaggtgtttacaa 18233091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 22963903 - 22963944
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  22963903 atccttccaatggtgaaatctcactacccaaggtgtttacaa 22963944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 23824490 - 23824449
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  23824490 atccttccaatggtgaaatctcactacccaaggtgtttacaa 23824449  T

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Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 470
Target Start/End: Complemental strand, 1114931 - 1114895
Alignment:
Q  434 aaactctcaccaaagacactcaaccctaaagttctct 470  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  1114931 aaactctcaccaaagactctcaaccataaagttctct 1114895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 1115089 - 1115037
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactca 330  Q
    |||| ||| |||||| ||||||||||| |||||||||| ||||| ||||||||    
T  1115089 ctcaaaaataacaaaccctaatttctatccatttttcaagtcacccacactca 1115037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 5572839 - 5572740
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||   |||||| ||  ||| |||||||| ||| ||| |||| || ||||||||||  |||||||||||||||||    
T  5572839 gtgtggagcaaaggaagtggtaatcaatagataaagtgtctccaagcaacaacagcaa-aaacagacataaatctaagtgtagagcaacaccacaagcat 5572741  T

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Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 22708919 - 22709005
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataattaagagaggaagaa 223  Q
    |||||||| ||| ||| |||||||||||||| |||  ||||||||||||||  ||| |||||||| ||||||||  |||| ||||||||    
T  22708919 caacaacaacaa-aaacagacctagatctaa-tgtagagcaacaccacaagtgtatccaaagcaataaagataagcaagaaaggaagaa 22709005  T

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Target: scaffold0016 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 467
Target Start/End: Complemental strand, 102479 - 102292
Alignment:
Q  278 ctcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaatgannnnnnnnnatccttc 377  Q
    |||||||| |||||| |||||||||||||||||||||| ||||| ||||||||| ||| ||  | |||||||||||||||| ||         |||||||    
T  102479 ctcacaaaaaacaaaccctaatttctacccatttttcaagtcacacacactcat-aataaattcgaagagaaaacactaaaggatgctttttgatccttc 102381  T
Q  378 caataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 467  Q
    |  |||| |||| | |||  ||||||||||| |||||||||  || | | ||||||||| |||||||||| ||||||||| |||||||||    
T  102380 ctctaataaaatcttacttaccaaggtgttttcaaatgttttccaaccctagaaataaaatctcaccaaa-acactcaacactaaagttc 102292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 16178 - 16114
Alignment:
Q  144 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    ||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  16178 caacaaatttacctagatctaagtgtgaaacaacaccacaaacatattcaaagcaacaaagataa 16114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 16236 - 16190
Alignment:
Q  75 aataaaacttagacgtgtggagcaaaagaagtagtcatcaatgagta 121  Q
    ||||||||||||| |||| ||||||| |||||||| |||||||||||    
T  16236 aataaaacttagatgtgtcgagcaaaggaagtagtaatcaatgagta 16190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 358
Target Start/End: Complemental strand, 15977 - 15895
Alignment:
Q  274 aaaactcacaaagaacaaatcctaatttctacccatttttcacgtcactcacactcataaatgaaccctaagagaaaacactaaa 358  Q
    ||||| ||||||||||||| ||||||||   ||||||||||  ||||  ||||||||||||||||  |||| |||| ||||||||    
T  15977 aaaacccacaaagaacaaaacctaattttcccccatttttctggtca--cacactcataaatgaattctaaaagaagacactaaa 15895  T

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Target: scaffold0148 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 10628 - 10701
Alignment:
Q  135 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataa 208  Q
    |||||||| ||| ||| ||||||| ||||||||||  |||||||||||||||||| ||||||||| ||||||||    
T  10628 caacaacaacaaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataa 10701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 10935 - 10976
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  10935 atccttccaatggtgaaatctcactacccaaggtgtttacaa 10976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 2346 - 2464
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| |||||  | ||||||   |||||| ||  ||| |||||||| ||| ||| ||||||||||||||||||  | |||||||||||||||    
T  2346 gtgtggagcaaaggaagtgttgatcaatagataaagtgtctccaagcaacaacaacaa-aaacagacctagatctaagtgtagaacaacaccacaagcat 2444  T
Q  189 attcaaagcaacaaagataa 208  Q
    | ||||||||| ||||||||    
T  2445 aatcaaagcaataaagataa 2464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 5535 - 5655
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaata--gacctagatctaagtgtgaagcaacaccacaagc 186  Q
    |||||||| ||| ||||| || |||||| ||| |||| ||  ||| |||||||| ||||||| |  |||||||||||||||||  || ||||||||||||    
T  5535 gtgtggagtaaaggaagtggtaatcaat-agttaagtgtctccaaacaacaacaacaacaaaaacagacctagatctaagtgtagagaaacaccacaagc 5633  T
Q  187 atattcaaagcaacaaagataa 208  Q
    ||| ||||||||| ||||||||    
T  5634 ataatcaaagcaataaagataa 5655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 5889 - 5930
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  5889 atccttccaatggtgaaatctcactacccaaggtgtttacaa 5930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 133172 - 133131
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  133172 atccttccaatggtgaaatctcactacccaaggtgtttacaa 133131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 467
Target Start/End: Complemental strand, 8310 - 8217
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaaatgtttctcatctcaagaaataaactctcaccaaagacactcaaccctaaagttc 467  Q
    |||||||||||  |||||| |||||||||||||||||||| |||||||| || | ||||| ||   ||| |  ||||||||||||||||||||||||    
T  8310 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaagagat--cctcactacaaagacactcaaccctaaagttc 8217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 29733 - 29673
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaa 149  Q
    ||||| |||||| ||||| || |||||||||||||||||| |||| |||||||| ||||||    
T  29733 gtgtgaagcaaaggaagtggtaatcaatgagtaaagtatcctcaaccaacaacaacaacaa 29673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 29649 - 29613
Alignment:
Q  166 gtgtgaagcaacaccacaagcatattcaaagcaacaa 202  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  29649 gtgtaaagcaacaccacaagcataatcaaagcaacaa 29613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 43111 - 43171
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaa 149  Q
    ||||| |||||| ||||| || |||||||||||||||||| |||| |||||||| ||||||    
T  43111 gtgtgaagcaaaggaagtggtaatcaatgagtaaagtatcctcaaccaacaacaacaacaa 43171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 43191 - 43231
Alignment:
Q  162 ctaagtgtgaagcaacaccacaagcatattcaaagcaacaa 202  Q
    ||| |||| ||||||||||||||||||| ||||||||||||    
T  43191 ctatgtgtaaagcaacaccacaagcataatcaaagcaacaa 43231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 85539 - 85655
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||| ||||||| ||||| || ||||||| ||||||| ||  ||| ||||||||  ||  || ||||||||||||||||||  ||||||| |||||||||    
T  85539 gtgtagagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaataa--aacagacctagatctaagtgtagagcaacatcacaagcat 85636  T
Q  189 attcaaagcaacaaagataa 208  Q
    |  |||||| ||||||||||    
T  85637 aaccaaagc-acaaagataa 85655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 44202 - 44087
Alignment:
Q  89 gtgtggagcaaaagaagtagtcatcaatgagtaaagtatcatcaatcaacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcat 188  Q
    |||||||||||| ||||| || ||||||| ||||||| ||  ||| |||||||| ||| ||| ||||||| |||| |||||  |||||||||||||||||    
T  44202 gtgtggagcaaaggaagtggtaatcaatgtgtaaagtgtctccaagcaacaacaacaa-aaacagaccta-atct-agtgtagagcaacaccacaagcat 44106  T
Q  189 attcaaagcaacaaagataa 208  Q
    |  ||||| |||||||||||    
T  44105 aaacaaag-aacaaagataa 44087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 36725 - 36684
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  36725 atccttccaatggtgaaatctcactacccaaggtgtttacaa 36684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 43854 - 43813
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  43854 atccttccaatggtgaaatctcactacccaaggtgtttacaa 43813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 45402 - 45443
Alignment:
Q  371 atccttccaataatgaaatttcactacccaaggtgtttacaa 412  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  45402 atccttccaatggtgaaatctcactacccaaggtgtttacaa 45443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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