View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1301_low_5 (Length: 412)
Name: NF1301_low_5
Description: NF1301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1301_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 24232130 - 24231811
Alignment:
| Q |
4 |
atcaaagcagcggatcaatgagtcaaatttctatatattgaccatcttaccttatcaggaaaaggagtttttgatggtcaaggtgcaactgcttataaac |
103 |
Q |
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| T |
24232130 |
atcaaagcggcggatcaatgggttaaatttctatacatggaacatcttaccttatcaggaaaaggagtttttgatggtcaaggtgcaactgcttataaac |
24232031 |
T |
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| Q |
104 |
aagctcaacctgcagctgcttggagtggtaaaaagggtaacgtgaaaattttgatggtaaatatcaatctaaattttcatggtaaatagcttaatttaac |
203 |
Q |
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| T |
24232030 |
aagctcaacctgcagctgcttggagtggtaaaaagagtaacgtgaaaattttgatggtaaatatcaatctaaattttcatggtaaatagcttaatttaac |
24231931 |
T |
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| Q |
204 |
aaacatatctaattgagnnnnnnnnnnnnnnnnnnngttcaatttcaacagaatttaggttttatgtttgtcaacaattccatggtcaccggcgttactt |
303 |
Q |
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| T |
24231930 |
aaacatatctaattgag--------tttttttttttgttcaatttcaacagaatttaggttttatgtttgtcaacaattccatggtcaccggcgttactt |
24231839 |
T |
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| Q |
304 |
ctaaggacagcaaaaatttccatgtcat |
331 |
Q |
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| T |
24231838 |
ctaaggacagcaaaaatttccatgtcat |
24231811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 180
Target Start/End: Complemental strand, 24243819 - 24243665
Alignment:
| Q |
26 |
tcaaatttctatatattgaccatcttaccttatcaggaaaaggagtttttgatggtcaaggtgcaactgcttataaacaagctcaacctgcagctgcttg |
125 |
Q |
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| T |
24243819 |
tcaagtttctatatatggaccatcttaccttatcaggcaaaggagtttttgatggtcaaggtgcatctgtttacaaaaaagctcaacctgcagctgcttg |
24243720 |
T |
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| Q |
126 |
gagtggtaaaaagggtaacgtgaaaattttgatggtaaatatcaatctaaatttt |
180 |
Q |
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| T |
24243719 |
gagtggtaaaggcggtaactcaaaaaatttcatggtaaatatcaatctaaatttt |
24243665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 24298379 - 24298533
Alignment:
| Q |
26 |
tcaaatttctatatattgaccatcttaccttatcaggaaaaggagtttttgatggtcaaggtgcaactgcttataaacaagctcaacctgcagctgcttg |
125 |
Q |
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| T |
24298379 |
tcaagtttctatatatggaccatcttaccttatcaggcaaaggagtttttgatggtcaaggtgcatctgtttacaaaaaagctcaacctgcagctgcttg |
24298478 |
T |
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| Q |
126 |
gagtggtaaaaagggtaacgtgaaaattttgatggtaaatatcaatctaaatttt |
180 |
Q |
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| T |
24298479 |
gagtggtaaaggcggtaactcaaaaaatttcatggtaaatatcaatctaaatttt |
24298533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 328
Target Start/End: Complemental strand, 24243596 - 24243508
Alignment:
| Q |
240 |
gttcaatttcaacagaatttaggttttatgtttgtcaacaattccatggtcaccggcgttacttctaaggacagcaaaaatttccatgt |
328 |
Q |
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| T |
24243596 |
gttcaatttcaacagaatttcggttttaatttcgtcaacaattccctcgtccacggcgttacttctaaggacagcaaaaatttccatgt |
24243508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 328
Target Start/End: Original strand, 24298602 - 24298690
Alignment:
| Q |
240 |
gttcaatttcaacagaatttaggttttatgtttgtcaacaattccatggtcaccggcgttacttctaaggacagcaaaaatttccatgt |
328 |
Q |
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| T |
24298602 |
gttcaatttcaacagaatttcggttttaatttcgtcaacaattccctcgtccacggcgttacttctaaggacagcaaaaatttccatgt |
24298690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 37200820 - 37200873
Alignment:
| Q |
344 |
cttctaaattgtagagacgtttgagtaccaaattactccgaggctctctctaat |
397 |
Q |
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| T |
37200820 |
cttccaaattgtagagatgtttgagaaccaaattacaccgaggctctccctaat |
37200873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 42843560 - 42843640
Alignment:
| Q |
17 |
atcaatgagtcaaatttctatatattgaccatcttaccttatcaggaaaaggagtttttgatggtcaaggtgcaactgctt |
97 |
Q |
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| T |
42843560 |
atcaatgggttaaatttggatatgttgactattttaccttatcaggtaaaggtgtttttgatggtaatggtgaaactgctt |
42843640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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