View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1302-Insertion-1 (Length: 287)

Name: NF1302-Insertion-1
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1302-Insertion-1
NF1302-Insertion-1
[»] chr8 (1 HSPs)
chr8 (8-287)||(8829530-8829809)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 8829809 - 8829530
Alignment:
Q  8 aatgaaggtattaggaacagggttaatagttacccatttaccattcttaaggacttgcaaaccagccacatcattttgcaacaaaatggtaatgacattt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8829809 aatgaaggtattaggaacagggttaatagttacccatttaccatccttaaggacttgcaaaccagccacatcattttgcaacaaaatggtaatgacattt 8829710  T
Q  108 gggtcagcatgtgctggcaaaccataagttaggtctggttcaggacatggagggtagtagttaatagccatgtgttgtccatgtttgccaagtgttttgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8829709 gggtcagcatgtgctggcaaaccataagttaggtctggttcaggacatggagggtagtagttaatagccatgtgttgtccatgtttgccaagtgtgttgt 8829610  T
Q  208 ttatgtaatccttttccaaacctaaactttctgatattgcatcaagcaatctcaatgctagccttctcaattgtctgcta 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8829609 ttatgtaatccttttccaaacctaaactttctgatattgcatcaagcaatctcaatgctagccttctcaattgtctgcta 8829530  T

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