View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302-Insertion-2 (Length: 324)
Name: NF1302-Insertion-2
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302-Insertion-2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 40786171 - 40785856
Alignment:
| Q |
8 |
gttcctaatttaacaacatagaaaaatatttattcttgatnnnnnnnnnnnnnntacttaaagtcctaaataggtttactaagaatcccagcactcctct |
107 |
Q |
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| T |
40786171 |
gttcctaatttaacaacatagaaaaatatttattcttgataaaaaaataaaaaatacttaa-gtcctaaataggtttactaagaatcccagcattcctct |
40786073 |
T |
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| Q |
108 |
ctctgcatcttcaactgcttgtagaaatttccaatgaaagcttcagcttttgcaaaaagttcttgaccattaacaccacaaatctcatcttctacttcaa |
207 |
Q |
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| T |
40786072 |
ctctgcatcttcaactgcttgtagaaatttccaatgaaagcttcagcttttgcaaaaagttcttgaccattaacaccacaaatctcatcttctacttcaa |
40785973 |
T |
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| Q |
208 |
cctcctcatccttcacttctagatcatcttctccatcttctatgnnnnnnntacttggcattgaaggacattttttcaccttatccactttactaacacc |
307 |
Q |
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| T |
40785972 |
cctcctcatccttcacttctagatcatcttctccatcttctatgaaaaaaatacttggcattgaaggacattttttcaccttatccactttactaacacc |
40785873 |
T |
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| Q |
308 |
aacatcaacatacacaa |
324 |
Q |
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| T |
40785872 |
aacatcaacatacacaa |
40785856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 105 - 311
Target Start/End: Complemental strand, 40793827 - 40793621
Alignment:
| Q |
105 |
tctctctgcatcttcaactgcttgtagaaatttccaatgaaagcttcagcttttgcaaaaagttcttgaccattaacaccacaaatctcatcttctactt |
204 |
Q |
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| T |
40793827 |
tctctttgcatcttcaattgcttgtagaagttacctatgaaagcctcagcttttgcaaaaagttcttgtccattaacaccataaatctcatcttcaactt |
40793728 |
T |
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| Q |
205 |
caacctcctcatccttcacttctagatcatcttctccatcttctatgnnnnnnntacttggcattgaaggacattttttcaccttatccactttactaac |
304 |
Q |
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| T |
40793727 |
caacctcttcattcttcacttctaaatcatcttctccatcttctataaaaaagatacttgccattgaaggacactttttcatcttttcaacttttgtaac |
40793628 |
T |
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| Q |
305 |
accaaca |
311 |
Q |
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| T |
40793627 |
accaaca |
40793621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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