View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13020_high_11 (Length: 447)
Name: NF13020_high_11
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 199 - 433
Target Start/End: Complemental strand, 36731005 - 36730766
Alignment:
| Q |
199 |
atctcacgaaaacttctggacagtataatctcattattgctttatgatttgttagagcatcattaaaatgatattatatagtatgaataatggaaatacc |
298 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36731005 |
atctcacgaaaacttcaggacagtataatctcattattgctttatgatttgttagagcatcattaaaatgatattatatagtatgaataatggaaacacc |
36730906 |
T |
|
| Q |
299 |
ttt-nnnnnnnnnnnnngaataatggaaactaatgccaaaaaattatagcataaaccaaactccaaacacataaaccataac----aacaatgccacaaa |
393 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
36730905 |
tttaaaaaaaaaaaaaagaataatggaaacttatgccaaaaaattatagcataaaccaaactccaaatacataaaccataacaacaaacaatgacacaaa |
36730806 |
T |
|
| Q |
394 |
attcaaaacctaacatcacgggtaggtgtcatatgaacat |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36730805 |
attcaaaacctaacatcacgggtaggtgtcatatgaacat |
36730766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 36732565 - 36732435
Alignment:
| Q |
19 |
tgaaagttgttttagtgtgtcaaggaccattatgaagataattggtgcagtcttcgatggtgctagagaaggcatggatgacactggttggattagcaga |
118 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
36732565 |
tgaaagttgttttagtatgtcaaggatcattatgaagataattggtgcagtcttcgatggtgctagagaaggcatggatgacactagtcggattagcaga |
36732466 |
T |
|
| Q |
119 |
tctttaaaaattattctcaaaatttgtttta |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36732465 |
tctttaaaaattattctcaaaatttgtttta |
36732435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 36731655 - 36731609
Alignment:
| Q |
147 |
ttaagtatgctgagctagacgtggagatataacttaagtacttaaat |
193 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36731655 |
ttaagtatgatgagctagacgtagagatataacttaagtacttaaat |
36731609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 41550448 - 41550578
Alignment:
| Q |
19 |
tgaaagttgttttagtgtgtcaaggaccattatgaagataattggtgcagtcttcgatggtgctagagaaggcatggatgacactggttggattagcaga |
118 |
Q |
| |
|
||||| |||||| |||||| | |||||| | | |||||| ||||||||| |||||||| |||||||||||||| || |||||||| ||||||||||| | |
|
|
| T |
41550448 |
tgaaaattgtttcagtgtgccgaggaccttgaagaagattattggtgcaatcttcgatagtgctagagaaggcctgaatgacactagttggattagctgg |
41550547 |
T |
|
| Q |
119 |
tctttaaaaattattctcaaaatttgtttta |
149 |
Q |
| |
|
||||| |||||||| ||||||| |||||||| |
|
|
| T |
41550548 |
tctttgaaaattatcctcaaaaattgtttta |
41550578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 29515506 - 29515562
Alignment:
| Q |
59 |
attggtgcagtcttcgatggtgctagagaaggcatggatgacactggttggattagc |
115 |
Q |
| |
|
||||||| ||||||||| || ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
29515506 |
attggtgtagtcttcgaaagttctagagaaggcttggatgacactagttggattagc |
29515562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University