View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13020_high_14 (Length: 417)
Name: NF13020_high_14
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_high_14 |
 | |
|
| [»] scaffold0169 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Complemental strand, 33569282 - 33568893
Alignment:
| Q |
8 |
catcagagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcattgattgattga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33569282 |
catcagagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcattgattgattga |
33569183 |
T |
|
| Q |
108 |
ttgagattttgaagaattgttaacaaagaacatggcagagtaacaaatatatataccagtgcagcaaaaacagttccaaatgtgctgtcatagacaacaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33569182 |
----gattttgaagaattgttaacaaagaacatggcagagtaacaaatatatataccagtgcagcaaaaacagttccaaatgtgctgtcatagacaacaa |
33569087 |
T |
|
| Q |
208 |
aggcaaaactgccatcaagttccttgacaacttgatctggtggatatggaccacggtcgcggagtgtcctataagcttcaatcagaaacatggcttcatc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33569086 |
aggcaaaactgccatcaagttccttgacaacttgatctggtggatatggaccacggtcacggagtgtcctataagcttcaatcagaaacatggcttcatc |
33568987 |
T |
|
| Q |
308 |
agttccctttgacaaaccatattgcttgttcagtaaggacaaattgttcaaactccccaagaacaaacaatatatgtcatcaagcccacagaac |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33568986 |
agttccctttgacaaaccatattgcttgttcagtaaggataaattgttcaaactccccaagaacaaacagtatatgtcatcaagcccacagaac |
33568893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 5946448 - 5946179
Alignment:
| Q |
8 |
catcagagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcattgattgattga |
107 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
5946448 |
catccgagatcacaacagatccatcgcctgcaataccttagtacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcattcattgatggg |
5946349 |
T |
|
| Q |
108 |
ttgagattttgaagaattgttaacaaagaacatggcagagtaacaaatatatataccagtgcagcaaaaacagttccaaatgtgctgtcatagacaacaa |
207 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||||||||||||| | |||||||||| ||||||| |
|
|
| T |
5946348 |
ttgagattttgaagaattgttgacaaagaacatggtagagtaacaaatatag----cagtgcagaaaaaacagttccaactatgctgtcataaacaacaa |
5946253 |
T |
|
| Q |
208 |
aggcaaaactgccatcaagttccttgacaacttgatctggtggatatggaccacggtcgcggagtgtcctataa |
281 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
5946252 |
aggcaaaactaccatcaagttccttagcaacttgatctggtggatatggaccactgtcacgaagtgtcctataa |
5946179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 19026117 - 19025963
Alignment:
| Q |
8 |
catcagagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcattgattgattga |
107 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
19026117 |
catccgagatcacaacagatccatcgcctacaataccctagtacagcttcaatccactgtcagaaccctgcataaaaaacaaacatcattcattgatggg |
19026018 |
T |
|
| Q |
108 |
ttgagattttgaagaattgttaacaaagaacatggcagagtaacaaatatatata |
162 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
19026017 |
ttgagattttgaagaattgttgacaaagaacatggtagagtaacaaatatatata |
19025963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 19025913 - 19025835
Alignment:
| Q |
203 |
aacaaaggcaaaactgccatcaagttccttgacaacttgatctggtggatatggaccacggtcgcggagtgtcctataa |
281 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
19025913 |
aacaaaggcaaaactaccatcaagttccttagcaacttgatctggtggatatggaccacggtcacgaagtgtcctataa |
19025835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 92 - 281
Target Start/End: Original strand, 21495018 - 21495215
Alignment:
| Q |
92 |
atcattgattgattgattgagattttgaagaattgttaacaaagaacatggcagagtaacaaatatatatac--------cagtgcagcaaaaacagttc |
183 |
Q |
| |
|
|||||| |||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
21495018 |
atcattcattgatgggttgagattttgaagaattgttgacaaagaacatggtagagtaacaaatatatatatatatatagcagtgcagaaaaaacagttc |
21495117 |
T |
|
| Q |
184 |
caaatgtgctgtcatagacaacaaaggcaaaactgccatcaagttccttgacaacttgatctggtggatatggaccacggtcgcggagtgtcctataa |
281 |
Q |
| |
|
||| |||||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
21495118 |
caactgtgctgtcataaacaacaaaggaaaaactaccatcaagttccttagcaacttgatctggtggatatggaccacggtcatgaagtgtcctataa |
21495215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 19286156 - 19286244
Alignment:
| Q |
8 |
catcagagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcatt |
97 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| || | |||||||||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
19286156 |
catcagagatcacaacagatccatcacctgtaatagcc-agtacaacttcaatgcatcatcaaaaccctgcataaaaaacaaacatcatt |
19286244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 28024 - 27936
Alignment:
| Q |
8 |
catcagagatcacaacagatccatcagctgcaataccccaatacaacttcaatccaccatcagaaccctgcataaaaaacaaacatcatt |
97 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||| | |||||||||||| ||| || | ||||||||||||||||||||||||||| |
|
|
| T |
28024 |
catcaaagatcacaacagatccatcaccttcaataccc-agtacaacttcaatgcacgattaaaaccctgcataaaaaacaaacatcatt |
27936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 35549433 - 35549355
Alignment:
| Q |
211 |
caaaactgccatcaagttccttgacaacttgatctggtggatatggaccacggtcgcggagtgtcctataagcttcaat |
289 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||| || ||||||| | ||| || |||||||||||||||||||| |
|
|
| T |
35549433 |
caaaactaccatcaagttctttgaggacttgatctgcagggaatggacccctgtcacgaagtgtcctataagcttcaat |
35549355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University