View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13020_high_15 (Length: 413)
Name: NF13020_high_15
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 27349610 - 27349212
Alignment:
| Q |
1 |
ttgagtgcttcaattttattttacaatttctcaaagatgttttattggtgttgatggaaattgactatactaacattgatgcaggaacctcctatcattg |
100 |
Q |
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| T |
27349610 |
ttgagtgcttcaattttattttacaatttttcaaagatgttttattggtgttgatggaaattgactatactaacattgatgcaggaacctcctatcattg |
27349511 |
T |
|
| Q |
101 |
caaagaagggtatattcataaatgggtaagataaacatgtgtgtcagtgtttctgcttgttaatgtagttcaaatattcacttagtccttacaaaattat |
200 |
Q |
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| T |
27349510 |
caaagaagggtatattcataaatgggtaagataaacatgtgtgtcagtgtttctgcttgttaatgtagttcaaatattcacttagtccttacaaaattat |
27349411 |
T |
|
| Q |
201 |
gaacttttgagtttagtccctataannnnnnnnatcatttttaagtcctcgacatatttaaaataacatggtacttatagttcctattgtgagactaaaa |
300 |
Q |
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| T |
27349410 |
gaacttttgagtttagtccctataattttttttatcatttttaagtcctcgacatatttaaaataacatggtacttatagttcctattgtgagactaaaa |
27349311 |
T |
|
| Q |
301 |
gcaccctgatcttataaaaggtatattctaaaatcacac--ttatatttttcatttgttataggacattttaaaaacttttaactttgttccatcttcc |
397 |
Q |
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| T |
27349310 |
gcaccctgatcttataaaaggtatattctaaaatcacacttttatatttttcatttgttataggacattttaaaagcttttaattttgttccatcttcc |
27349212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 37284340 - 37284297
Alignment:
| Q |
182 |
ttagtccttacaaaattatgaacttttgagtttagtccctataa |
225 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
37284340 |
ttagtccttacaaaattatgagtttttaagtttagtccctataa |
37284297 |
T |
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