View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13020_high_16 (Length: 404)
Name: NF13020_high_16
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 5 - 388
Target Start/End: Complemental strand, 37626765 - 37626383
Alignment:
| Q |
5 |
tggataaaggtcggacggtgtagaaatcaagcaaattttattttttcaatcacaaatactgtcagatgaccttgatcaaacaatcactggtcactgatac |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37626765 |
tggataaaggtcggacggtgtagaaatcaagcaaatttaattttta-aatctcaaatactgtcagatgaccttgatcaaacaatcactggtcactgatac |
37626667 |
T |
|
| Q |
105 |
gatgacacaatgcaaccaatccattcaatacacacttaattcaattttctattatagtgtaatcttgagcataaagtcacctgcagatttctgttaattc |
204 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37626666 |
gaggatgcaatgcaaccaatccattcaatacacacttaattcaattttttattatagtgtaatcttgagcataaagtcacctgcagatttctgttaattc |
37626567 |
T |
|
| Q |
205 |
tctttggtgtaatgactgaaccatatcagagtctaactttgccaattccagaagagcaggtatttggttacttcctttgctatattcttccatatagttc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37626566 |
tctttggtgtaatgactgaaccatatcagagtctaactttgccaattccagaagagcaggtatttggttacttcctttgctatattcttccatatagttc |
37626467 |
T |
|
| Q |
305 |
cttgcttctaaccttgccattcttaggtgctttggaagtgttaaggatttggcaatgttcctacctacttcaggactaaggtgt |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37626466 |
cttgcttctaaccttgccattcttaggtgctttggaagtgttaaggatttggcaatgttcctacctatttcaggactaaggtgt |
37626383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 113 - 388
Target Start/End: Complemental strand, 37618276 - 37618001
Alignment:
| Q |
113 |
aatgcaaccaatccattcaatacacacttaattcaattttctattatagtgtaatcttgagcataaagtcacctgcagatttctgttaattctctttggt |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
37618276 |
aatgcaaccaatccatccaatacacacttaattcaattttttattatagtgtaatcttgagcataaagtcacctgcatatttctgctaattctctttggt |
37618177 |
T |
|
| Q |
213 |
gtaatgactgaaccatatcagagtctaactttgccaattccagaagagcaggtatttggttacttcctttgctatattcttccatatagttccttgcttc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37618176 |
gtaatgactgaaccatatcagagtctaactttgccaattccagaagagcaggtatttggttacttcctttgctatattcttccatatagttccttgcttc |
37618077 |
T |
|
| Q |
313 |
taaccttgccattcttaggtgctttggaagtgttaaggatttggcaatgttcctacctacttcaggactaaggtgt |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37618076 |
taaccttgccattcttaggtgctttggaagtgttaaggatttggcaatgttcctacccacttcaggactaaggtgt |
37618001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University