View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13020_high_20 (Length: 286)
Name: NF13020_high_20
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 3058479 - 3058315
Alignment:
| Q |
1 |
atagtagtctgtcacctagccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3058479 |
atagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
3058380 |
T |
|
| Q |
101 |
ataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3058379 |
ataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
3058315 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 3062780 - 3062616
Alignment:
| Q |
1 |
atagtagtctgtcacctagccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3062780 |
atagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
3062681 |
T |
|
| Q |
101 |
ataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3062680 |
ataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
3062616 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 26082917 - 26083081
Alignment:
| Q |
1 |
atagtagtctgtcacctagccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26082917 |
atagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
26083016 |
T |
|
| Q |
101 |
ataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26083017 |
ataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
26083081 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 165 - 271
Target Start/End: Complemental strand, 2469667 - 2469561
Alignment:
| Q |
165 |
attttgtctatctctttcctatgcaggtgtctcaactcacaaatttgctgcaaaaattattctcaacttcatcccattagaatgaagtgtccttaacctg |
264 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2469667 |
attttgtctatctctttcctatgcaagtgtctcaactcacaaatttgctgcaaaaattattctcaacttcatcccattagaatgaagtgtccttaacctg |
2469568 |
T |
|
| Q |
265 |
ttacagt |
271 |
Q |
| |
|
||||||| |
|
|
| T |
2469567 |
ttacagt |
2469561 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 26065164 - 26065216
Alignment:
| Q |
110 |
aacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctca |
162 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
26065164 |
aacataaaatatcacaaaatactattgtattaatctgaaatctcaatgtctca |
26065216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 2473908 - 2473830
Alignment:
| Q |
166 |
ttttgtctatctctttcctatgcaggtgtctcaactcacaaatttgctgcaaaaattattctcaacttcatcccattagaatgaagt |
252 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||||||||||||||||| |||| || |||||||||||||||||||||||| |
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|
| T |
2473908 |
ttttgtctctctctttcctatgcaagtgtc-------acaaatttgctgcaaaa-ttatgcttaacttcatcccattagaatgaagt |
2473830 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 17439420 - 17439584
Alignment:
| Q |
1 |
atagtagtctgtcacctagccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17439420 |
atagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
17439519 |
T |
|
| Q |
101 |
ataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17439520 |
ataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
17439584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 17443722 - 17443886
Alignment:
| Q |
1 |
atagtagtctgtcacctagccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17443722 |
atagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
17443821 |
T |
|
| Q |
101 |
ataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17443822 |
ataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
17443886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 6667980 - 6668144
Alignment:
| Q |
1 |
atagtagtctgtcacctagccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6667980 |
atagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
6668079 |
T |
|
| Q |
101 |
ataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
165 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6668080 |
ataaaagaaaaaataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
6668144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 4873121 - 4872957
Alignment:
| Q |
1 |
atagtagtctgtcacctagccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4873121 |
atagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
4873022 |
T |
|
| Q |
101 |
ataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
165 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4873021 |
ataaaagaaaaaataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
4872957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 4877421 - 4877259
Alignment:
| Q |
1 |
atagtagtctgtcacctagccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4877421 |
atagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
4877322 |
T |
|
| Q |
101 |
ataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
165 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4877321 |
ataaaagaaaac--aaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca |
4877259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 30190041 - 30189876
Alignment:
| Q |
1 |
atagtagtctgtcacctagccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30190041 |
atagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttttgcagaggtaacttcaactactacattaaa |
30189942 |
T |
|
| Q |
101 |
ataaaagaaaacataaaatatcac-aaaatactattgtgtacatctgaaatctcaatgtctcaaca |
165 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30189941 |
ataaaagaaaacataaaatatcacaaaaatactattgtgtacatctgaaagctcaatgtctcaaca |
30189876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 28010300 - 28010402
Alignment:
| Q |
38 |
aaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaacataaaatatcacaaaatactattgt |
137 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||||| | |
|
|
| T |
28010300 |
aaacacttcaacaagtatgggtcaccatacttatgcagaggtaacttcaacaactatattaaaacaaaagataacataaaatatcacaaaatactattat |
28010399 |
T |
|
| Q |
138 |
gta |
140 |
Q |
| |
|
||| |
|
|
| T |
28010400 |
gta |
28010402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 28013761 - 28013789
Alignment:
| Q |
137 |
tgtacatctgaaatctcaatgtctcaaca |
165 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28013761 |
tgtacatctgaaatctcaatgtctcaaca |
28013789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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