View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13020_high_21 (Length: 279)
Name: NF13020_high_21
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 102 - 269
Target Start/End: Complemental strand, 4055271 - 4055104
Alignment:
| Q |
102 |
tcaactcctctacttataaagtaaccattcaacctcaacgttgatgggtctaacccaaaagctatagctatggaaccaagatcaannnnnnnatcatcac |
201 |
Q |
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| T |
4055271 |
tcaactcctctacttataaagtaaccattcaacctcaacgttgatgggtctaacccaaaagctatagctatggaaccaagatcaattttttcatcatcac |
4055172 |
T |
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| Q |
202 |
aagtaacaagttcaacactttttgactttgagagtgaagggcataacagtaatatctttgtttctctg |
269 |
Q |
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| T |
4055171 |
aagtaacaagttcaacactttttgactttgagagtgaagggcataacagtgatatctttgtttctctg |
4055104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 4055357 - 4055324
Alignment:
| Q |
16 |
catcatggttacttttcccagtagacaaacctct |
49 |
Q |
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| T |
4055357 |
catcatggttacttttcccagtagacaaacctct |
4055324 |
T |
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