View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13020_high_24 (Length: 259)
Name: NF13020_high_24
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_high_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 45007461 - 45007693
Alignment:
| Q |
13 |
aatatgagttggtgtggttttgttagttaagagttagtttat-gtagatgaatttatagcatatagtggataaattatgtgatagtgaacaacttataac |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45007461 |
aatacgagttggtgtggttttgttagttaagagttagtttatagtagatgattttatagcatatagtggataaattatgtgatagtgaacagcttataac |
45007560 |
T |
|
| Q |
112 |
aaatataagttgataaatgataatttaa-ttgaagtgtttggtagaaatagtagttcaattagccataattgttaaaatgatattaattagtaatgggga |
210 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| | |
|
|
| T |
45007561 |
aaatataagttgataaatgataatttatgttgaagtgtttggtagaaatagtagttcaattaaccataattgttaaaatgacattaattagtaatgggaa |
45007660 |
T |
|
| Q |
211 |
tgagtaactcatttgattgacttaagtgattaa |
243 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
45007661 |
tgagtaactcatttggttgacttaagtgattaa |
45007693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University