View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13020_high_29 (Length: 236)
Name: NF13020_high_29
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 22810233 - 22810442
Alignment:
| Q |
12 |
atatatataatctaatagactctaaactaatatgtccaagtctacttccttggttcaacttagttaagagttcattccaagattagctggcattggtttt |
111 |
Q |
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| T |
22810233 |
atatatataatctaatagactctaaactaatatgtccaagtctacttccttggttcaacttagttaagagttcattccaagattagctggcattggtttt |
22810332 |
T |
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| Q |
112 |
catcatcttgttgcaattgaaggaagtcaaattcgccaaaagatgaatcggaacaagaagaggagctatcactatctaagccatccacgatattcataat |
211 |
Q |
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| T |
22810333 |
catcatcttgttgcaattgaaggaagtcaaattcgccaaaagatgaatcggaaccagaagaggagctatcactatctaagccatccacgatattcataat |
22810432 |
T |
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| Q |
212 |
ttcaacaaat |
221 |
Q |
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|||||||||| |
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| T |
22810433 |
ttcaacaaat |
22810442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 22845949 - 22846037
Alignment:
| Q |
38 |
ctaatatgtccaagtctactt-ccttggttcaacttagttaagagttcattccaagattagctggcattggttttcatcatcttgttgc |
125 |
Q |
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| T |
22845949 |
ctaatatgtccatgtctacttacctcggttcaacttagttaagagttcattccaagattagctggcattggttttcatgttcttgttgc |
22846037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 22835587 - 22835664
Alignment:
| Q |
10 |
atatatatata-atctaatagactctaaactaatatgtccaagtctacttccttggttcaacttagttaagagttcat |
86 |
Q |
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| T |
22835587 |
atatatatatatatataatagactcaaaactaatatgtccaagtctacttctttggttcaacttagttaagagttcat |
22835664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 22835663 - 22835730
Alignment:
| Q |
154 |
atgaatcggaacaagaagaggagctatcactatctaagccatccacgatattcataatttcaacaaat |
221 |
Q |
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| T |
22835663 |
atgaatcggaaccggaagaggagctatcactatctaagccatccacgatattcaaaatttcagcaaat |
22835730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 22846087 - 22846148
Alignment:
| Q |
161 |
ggaacaagaagaggagctatcactatctaagccatccacgatattcataatttcaacaaatt |
222 |
Q |
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| T |
22846087 |
ggaactagaagaggaactatcactatctaagccatccaagatattcatatttgcaacaaatt |
22846148 |
T |
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