View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13020_high_30 (Length: 220)
Name: NF13020_high_30
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 13021854 - 13021941
Alignment:
| Q |
17 |
ctgtgtcggataaatatcatatgtgtgcatcataatcttagaatgtgtggttgggcttaagcttaatacgaaccccacaaaaccggct |
104 |
Q |
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| T |
13021854 |
ctgtgtcggataaatatcgtatgtgtgcatcataatcttagaatgtgtggttgggcttaaacttaacacgtaccccacaaaaccggct |
13021941 |
T |
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Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 13021937 - 13022006
Alignment:
| Q |
151 |
cggctagggtacaatgacataaagtaagagttacaatagagtatacagactagaaaagactaaaccaccc |
220 |
Q |
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| T |
13021937 |
cggctagggtacaatgacataaagtaagagttacaatagagtataaagactagaaaagactaaaccaccc |
13022006 |
T |
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