View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13020_low_1 (Length: 690)
Name: NF13020_low_1
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 9075999 - 9075597
Alignment:
| Q |
1 |
ttcgccatgctaaactctttgttttaccaaaggttttaaaaaataatccgaaattgttaccatgatatcaaatagattttcattggtttcttccttttgt |
100 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9075999 |
ttcgccaagctaaactctttgttttaccaaaggttttaaaaaataatccaaaattgttaccatgatatcaaatagattttcattggtttcttccttttgt |
9075900 |
T |
|
| Q |
101 |
ttgcttatggtcacaggtttttgaagtggctccgtccttgcatatggtggagctgcgaaaaacaggcggcgacacactagagtttcacaaggcatgtgaa |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9075899 |
ttgcttatggttacaggtttttgaagtggctccgtccttgcatatggtggagctgcgaaaaacaggcggcgacacactagagtttcacaaggcatgtgaa |
9075800 |
T |
|
| Q |
201 |
aagtattttgattctcaatttagttttttgggcaaaagaaatataaatctatttataggcatataaatctttttaacatcttattcattgttttctatgc |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9075799 |
aattattttgattctcaatttagttttttgggcaaaagaaatataaatctatttataggcatataaatctttttaacatcttattcattgttttgtatgc |
9075700 |
T |
|
| Q |
301 |
agttctacaaaatcttttcgtcagggttgcaagacatagtgtggaacactgacaaaaaataatgaagtattaaggtatctgagaggcctccaatcattga |
400 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9075699 |
agttctacaaaatcttttcatcagggttgcaagacatagtgtggaacactgacaaaaaataatgaagtattaaggtatctgagaggcctccaatcattga |
9075600 |
T |
|
| Q |
401 |
aca |
403 |
Q |
| |
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||| |
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| T |
9075599 |
aca |
9075597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 9084759 - 9084523
Alignment:
| Q |
1 |
ttcgccatgctaaactctttgttttaccaaaggttttaaaaaataatccgaaattgttaccatgatatcaaatagattttcattggtttcttcct-tttg |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||||||||| |||| |
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|
| T |
9084759 |
ttcgccacgctaaactctttgttttaccaaaggttttaaaaaataatctgaaattgtgaccataatatcaaatgcattttcattggtttcttcccatttg |
9084660 |
T |
|
| Q |
100 |
tttgcttatggtcacaggtttttgaagtggctccgtccttgcatatggtggagctgcgaaaaacaggcggcgacacactagagtttcacaaggcatgtga |
199 |
Q |
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|||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| |
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| T |
9084659 |
tttgcttatggttacaggttttcgaagtggctccttccttgcatatggtggagctgcgaaagacacgcggcgacacactagagtttcacaaggcaagtga |
9084560 |
T |
|
| Q |
200 |
aaagtattttgattctcaatttagttttttgggcaaaa |
237 |
Q |
| |
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||| ||||||||||||||||||||| |||||||||||| |
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| T |
9084559 |
aaattattttgattctcaatttagt-ttttgggcaaaa |
9084523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 402 - 532
Target Start/End: Complemental strand, 9075573 - 9075443
Alignment:
| Q |
402 |
catgacagaatgaaggaaatgaagataattctgtcatggatccgggaaatacggaagtaagacgtagtgagtgtaggaagtttcctagtactaggctgaa |
501 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9075573 |
catgacagaatgaaggaaatgaagataattctgtcatggatccgggaaatacggaagtaagacgtagtgagtgtaggaagtttcctagtactaggctgaa |
9075474 |
T |
|
| Q |
502 |
gggttataaggaatgagtgtagaatatttga |
532 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
9075473 |
gggttataaggaatgagtgtagaatatttga |
9075443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 596 - 686
Target Start/End: Complemental strand, 9075379 - 9075289
Alignment:
| Q |
596 |
acacctttatcatttcattgttgatcctccatggttatacccaggagtgtaatttctgtttaaaattccatttaataaaaaacagtattat |
686 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9075379 |
acacctttatcatttcattgttgttcctccatggttatacccaggagtgtaatttctgtttaaaattccatttaataaaaaacagtattat |
9075289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 9084380 - 9084275
Alignment:
| Q |
274 |
taacatcttattcattgttttctatgcagttctacaaaatcttttcgtcagggttgcaagacatagtgtggaacactgacaaaaaataatgaagtattaa |
373 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9084380 |
taacatcttattcatcgatttatatgcagttctacaaaaccttttcatcagggttgcaagacatagtgtggaacactgacaaaaaataatgaagtattaa |
9084281 |
T |
|
| Q |
374 |
ggtatc |
379 |
Q |
| |
|
|||||| |
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|
| T |
9084280 |
ggtatc |
9084275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 6415963 - 6415727
Alignment:
| Q |
1 |
ttcgccatgctaaactctttgttttaccaaaggttttaaaaaataatccgaaattgttaccatgatatcaaatagattttcattggtttcttcct-tttg |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||||||||| |||| |
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|
| T |
6415963 |
ttcgccacgctaaactctttgttttaccaaaggttttaaaaaataatctgaaattgtgaccataatatcaaatgcattttcattggtttcttcccatttg |
6415864 |
T |
|
| Q |
100 |
tttgcttatggtcacaggtttttgaagtggctccgtccttgcatatggtggagctgcgaaaaacaggcggcgacacactagagtttcacaaggcatgtga |
199 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
6415863 |
tttgcttatggttacaggttttcgaagtggctccttccttgcatatggtggagctgcgaaagacacgcggcgacacactagagtttcacaaggcaagtga |
6415764 |
T |
|
| Q |
200 |
aaagtattttgattctcaatttagttttttgggcaaaa |
237 |
Q |
| |
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||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
6415763 |
aaattattttgattctcaatttagt-ttttgggcaaaa |
6415727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 6415584 - 6415479
Alignment:
| Q |
274 |
taacatcttattcattgttttctatgcagttctacaaaatcttttcgtcagggttgcaagacatagtgtggaacactgacaaaaaataatgaagtattaa |
373 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6415584 |
taacatcttattcatcgatttatatgcagttctacaaaaccttttcatcagggttgcaagacatagtgtggaacactgacaaaaaataatgaagtattaa |
6415485 |
T |
|
| Q |
374 |
ggtatc |
379 |
Q |
| |
|
|||||| |
|
|
| T |
6415484 |
ggtatc |
6415479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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