View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13020_low_10 (Length: 449)

Name: NF13020_low_10
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13020_low_10
NF13020_low_10
[»] chr1 (2 HSPs)
chr1 (5-206)||(46360042-46360243)
chr1 (206-433)||(46360269-46360491)
[»] chr8 (4 HSPs)
chr8 (5-206)||(44461233-44461434)
chr8 (5-206)||(44468766-44468967)
chr8 (265-433)||(44461499-44461662)
chr8 (265-433)||(44469032-44469195)
[»] chr5 (1 HSPs)
chr5 (59-133)||(41584259-41584333)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 46360042 - 46360243
Alignment:
Q  5 cagataaacgaaatggacggtatagcttccgatgtggcataccagcagctaggtgaaatgtatcttaatattagggcattattttgataggaagttagaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46360042 cagataaacgaaatggacggtatagcttccgatgtggcataccagcagctaggtgaaatgtatcttaatattagggcattattttgataggaagttagaa 46360141  T
Q  105 tcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagttggatgaatttttgatgtttttccttctaatagattgttatgttg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46360142 tcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagttggatgaatttttgatgtttttccttctaatagattgttatgttg 46360241  T
Q  205 aa 206  Q
    ||    
T  46360242 aa 46360243  T

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Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 206 - 433
Target Start/End: Original strand, 46360269 - 46360491
Alignment:
Q  206 aactactttcctttttaataatgatgtcattaactttgagtatgtcaatcaattttatatatgcatgtggaatcactgtcttctaggctgcttttggtgt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46360269 aactactttcctttttaataatgatgtcattaactttgagtatgtcaatcaattttatatatgcatgtggaatcactgtcttctaggctgcttttggtgt 46360368  T
Q  306 ttggacaaaacattctagacagagaatgctgtttacatgaatgcaatatgattcatcgccgaattgctcatcacacactcataaacaacattatattgca 405  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||    
T  46360369 ttggacaaaacattctagacacagaatgctgtttacatgaatgcaatatgattcatcgccgaattgctcatcacacactcataaacaac-----attgca 46360463  T
Q  406 tggagtgagcattacactaccaagttta 433  Q
    |||||||||||||| |||||||||||||    
T  46360464 tggagtgagcattatactaccaagttta 46360491  T

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Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 44461233 - 44461434
Alignment:
Q  5 cagataaacgaaatggacggtatagcttccgatgtggcataccagcagctaggtgaaatgtatcttaatattagggcattattttgataggaagttagaa 104  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44461233 cagataaacgaaatggacagtatagcttccaatgtggcataccagcagctaggtgaaatgtatcttaatattagggcattattttgataggaagttagaa 44461332  T
Q  105 tcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagttggatgaatttttgatgtttttccttctaatagattgttatgttg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  44461333 tcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagtcggatgaattttttatgtttttccttctaatagattgttatgttg 44461432  T
Q  205 aa 206  Q
    ||    
T  44461433 aa 44461434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 44468766 - 44468967
Alignment:
Q  5 cagataaacgaaatggacggtatagcttccgatgtggcataccagcagctaggtgaaatgtatcttaatattagggcattattttgataggaagttagaa 104  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44468766 cagataaacgaaatggacagtatagcttccaatgtggcataccagcagctaggtgaaatgtatcttaatattagggcattattttgataggaagttagaa 44468865  T
Q  105 tcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagttggatgaatttttgatgtttttccttctaatagattgttatgttg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  44468866 tcttgatgcaaaattaattgagttgagaagatattaagaaaaaatgattaggagtcggatgaattttttatgtttttccttctaatagattgttatgttg 44468965  T
Q  205 aa 206  Q
    ||    
T  44468966 aa 44468967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 265 - 433
Target Start/End: Original strand, 44461499 - 44461662
Alignment:
Q  265 tatgcatgtggaatcactgtcttctaggctgcttttggtgtttggacaaaacattctagacagagaatgctgtttacatgaatgcaatatgattcatcgc 364  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44461499 tatgcatgtggaatcactttcttctaggctgcttttggtgtttggacaaaacattctagacagagaatgctgtttacatgaatgcaatataattcatcgc 44461598  T
Q  365 cgaattgctcatcacacactcataaacaacattatattgcatggagtgagcattacactaccaagttta 433  Q
    ||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||    
T  44461599 cgaattgctcatcacacactcataaacaac-----attgcatggagtgagcattacactaccaagttta 44461662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 265 - 433
Target Start/End: Original strand, 44469032 - 44469195
Alignment:
Q  265 tatgcatgtggaatcactgtcttctaggctgcttttggtgtttggacaaaacattctagacagagaatgctgtttacatgaatgcaatatgattcatcgc 364  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44469032 tatgcatgtggaatcactttcttctaggctgcttttggtgtttggacaaaacattctagacagagaatgctgtttacatgaatgcaatataattcatcgc 44469131  T
Q  365 cgaattgctcatcacacactcataaacaacattatattgcatggagtgagcattacactaccaagttta 433  Q
    ||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||    
T  44469132 cgaattgctcatcacacactcataaacaac-----attgcatggagtgagcattacactaccaagttta 44469195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 41584259 - 41584333
Alignment:
Q  59 gaaatgtatcttaatattagggcattattttgataggaagttagaatcttgatgcaaaattaattgagttgagaa 133  Q
    |||||| |||||||||||||||||| |||||||||  | ||||||||||| |||||||||||||||||| |||||    
T  41584259 gaaatgaatcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtggagaa 41584333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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