View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13020_low_13 (Length: 417)
Name: NF13020_low_13
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 25951389 - 25950983
Alignment:
| Q |
1 |
tggtagttaaagtagtgtcacttacacggacaccacacaccgatacaactaataactcaagatcaaacacggcagatttcaagtagatactcatcttgaa |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25951389 |
tggtagttgaagtagtgtcacttacacggacaccacacaccgataccactaataactcaagatcaaacactgcagatttcaagtagatactcatcttgaa |
25951290 |
T |
|
| Q |
101 |
atttgcattgtttgatctcgatccaacggtcactgactatgtgaatgcggaactttggtgactacataaaattatatatcaacatgtgttgcccctcaat |
200 |
Q |
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|| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25951289 |
atctgcattgtctgatctcgatccaacggtcactaactatgtgaatgcggaactttggtgactacataaaattatatatcaacatgtgttgcccctcaat |
25951190 |
T |
|
| Q |
201 |
ctgaagtgtcagtgctgcatcactatttttggtattatgctcgttgaagcacgcttaatttcaattaaaactatttttgaaattactttaataataaggt |
300 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
25951189 |
ctgaagtgtcagtgctgcatcactgtttttggtattatgctcgttgaagcacgcttaatttcaattaaaactatttttgaaattacttgaataataagtt |
25951090 |
T |
|
| Q |
301 |
ttgatcagcggtgcttactctctatattctcaaggattgttcttttgatt-ttactaataacttgtgtttgtttaactctttgtattttttgttgctcag |
399 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
25951089 |
ttgatcagtggtgcttactctctatattctcaaggattgttcttttgattcttactaataacttttgtttcttt-actctttgtattttttgttgctcag |
25950991 |
T |
|
| Q |
400 |
tgatgatg |
407 |
Q |
| |
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|||||||| |
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|
| T |
25950990 |
tgatgatg |
25950983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 25960640 - 25960228
Alignment:
| Q |
1 |
tggtagttaaagtagtgtcacttacacggacaccacacaccgatacaactaataactcaagatcaaacacggcagatttcaagtagatactcatcttgaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25960640 |
tggtagttgaagtagtgtcacttacacggacaccacacaccgataccactaataactcaagatcaaacactgcagatttcaagtagatactcatcttgaa |
25960541 |
T |
|
| Q |
101 |
atttgcattgtttgatctcgatccaacggtcactgactatgtgaatgcggaactttggtgactacataaaattatatatcaacatgtgttgcccctcaat |
200 |
Q |
| |
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|| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25960540 |
atctgcattgtctgatctcgatccaacggtcactaactatgtgaatgcggaactttggtgactacatagaattatatatcaacatgtgttgcccctcaat |
25960441 |
T |
|
| Q |
201 |
ct-gaagtgtcagtgctgcatcactatttttggtattatgctcgttgaagcacgcttaatttcaattaaaactatttttgaaattactttaataataagg |
299 |
Q |
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|| ||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||| |
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| T |
25960440 |
ctcaaagtgtcggtgctgcatcactctttttggtattatgcccgttgaagcaagcttaattttaattaaaactattgttgaaattacttgaataataaat |
25960341 |
T |
|
| Q |
300 |
tttgatcagcggtgcttactctctatattctcaaggattgttcttttgattttact--aataac---ttgtgtttgtttaactctttgtattttttgttg |
394 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||||||||||||||||| | || | | | || |||||||||||||||||||||||||||||| |
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| T |
25960340 |
tttgatcagtggtgcttactgtctatattctcaaggattgttcttttgattctgctacactttctttttttgtttgtttaactctttgtattttttgttg |
25960241 |
T |
|
| Q |
395 |
ctcagtgatgatg |
407 |
Q |
| |
|
||||||||||||| |
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|
| T |
25960240 |
ctcagtgatgatg |
25960228 |
T |
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