View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13020_low_18 (Length: 363)
Name: NF13020_low_18
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 8e-86; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 39636747 - 39636928
Alignment:
| Q |
8 |
aatattaaacaaaagtactaaaacacacaatacactatcaatttgataatttaggctccgtttggaagcgtagggaggggagagaagggatttgggaaga |
107 |
Q |
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| T |
39636747 |
aatattaaacaaaagtactaaaacacacaatacactatcaatttgataatttaggctccgtttggaagcgtagggaggggagagaagggatttgggaaga |
39636846 |
T |
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| Q |
108 |
aaaacaaaagaggcattttaactactatttcaaatttattagccaattgagtcaaaccacttgactataatctaagtggatctg |
191 |
Q |
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| T |
39636847 |
aaaac--aagaggcattttaactactatttcaaatttattagccaattgaatcaaaccacttgattatagtctaagtggatctg |
39636928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 185 - 322
Target Start/End: Original strand, 39640428 - 39640565
Alignment:
| Q |
185 |
ggatctgatatgttaatcaaattgtaaacaataacgacaaactttggtatagtgcttataggcattgttcctactgttctctacaaaaaatatagtatga |
284 |
Q |
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| T |
39640428 |
ggatatgatatgttaatcaaattgtaaacaataacgacaaactttggtatagtgcttataggcattgttcctactgttctctactaaaaatatagtatga |
39640527 |
T |
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| Q |
285 |
ctgtcatcaataattttaaaaggatgtcttttttatat |
322 |
Q |
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| T |
39640528 |
ccgtcaccaataatgttaaaaggatgtcttttttatat |
39640565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 34806741 - 34806682
Alignment:
| Q |
247 |
cattgttcctactgttctctacaaaaaatatagtatgactgtcatcaataattttaaaag |
306 |
Q |
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| T |
34806741 |
cattgttcctattattttctactaaaaaaatagtatgactgtcaccaataattttaaaag |
34806682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 39311324 - 39311280
Alignment:
| Q |
223 |
aaactttggtatagtgcttataggcattgttcctactgttctctac |
268 |
Q |
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| T |
39311324 |
aaactttggtatagtgct-ataggcactgttcctactgttctctac |
39311280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 41432442 - 41432508
Alignment:
| Q |
240 |
ttataggcattgttcctactgttctctacaaaaaatatagtatgactgtcatcaataattttaaaag |
306 |
Q |
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| T |
41432442 |
ttataggcactgctcctgctgttctctactaaaagtatagtataactgtcacgaataattttgaaag |
41432508 |
T |
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