View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13020_low_19 (Length: 359)
Name: NF13020_low_19
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 6 - 343
Target Start/End: Original strand, 32958687 - 32959029
Alignment:
| Q |
6 |
atattattcttagggtttggatcagagtttgatggtttttgatatacttgttctttctctttgaccatccaaccaccagattggtttccaggttgggttg |
105 |
Q |
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| T |
32958687 |
atattattcttagggtctgggtcagagtttgatggtttttgatatacttgttctttttctttgaccatccaaccaccagattggtttccaggttgggttg |
32958786 |
T |
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| Q |
106 |
gatgctcaaacattatcccaatctctcccttttgaggcttgtgcatgtttgttttcactttgaaccaacaattgttcatcatgccc----tatacatatc |
201 |
Q |
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| T |
32958787 |
gatgctcaaacattatcccaatctctcccttttgaggcttgtgcatgtttgttttcactttgaaccaacaattgttcatcatgccctatatatacatatc |
32958886 |
T |
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| Q |
202 |
aaaataaattgtaaacacaaaattaatacttgtttagacataatcatatacaaaataaaattattaggggttaaagcgaattagaaagtctagttatt-c |
300 |
Q |
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| T |
32958887 |
aaaataaattgtaaacacaaaattaatacttgtttagacataatcatatacaaaataaaattattaggggttaaagcgaattagaaagtctagttattac |
32958986 |
T |
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| Q |
301 |
gatacttgtttgtttagacatttcttaattgagcttacaaaac |
343 |
Q |
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| T |
32958987 |
gatacttgtttgtttagacatttcttaattgagcttacaaaac |
32959029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 192
Target Start/End: Original strand, 24862187 - 24862309
Alignment:
| Q |
70 |
ccatccaaccaccagattggtttccaggttgggttggatgctcaaacattatcccaatctctcccttttgaggcttgtgcatgtttgttttcactttgaa |
169 |
Q |
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| T |
24862187 |
ccatccaaccacctgattggttacctggttgtgttggatgttcaaacactatgccaatttctcctttgtggggcctacacacgtttgtttttaccctgaa |
24862286 |
T |
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| Q |
170 |
ccaacaattgttcatcatgccct |
192 |
Q |
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| T |
24862287 |
ccaacagttattcatcatgccct |
24862309 |
T |
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