View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13020_low_2 (Length: 622)

Name: NF13020_low_2
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13020_low_2
NF13020_low_2
[»] chr1 (4 HSPs)
chr1 (201-607)||(48097154-48097561)
chr1 (337-433)||(27466726-27466822)
chr1 (1-45)||(48043225-48043269)
chr1 (457-505)||(5691653-5691701)
[»] chr6 (1 HSPs)
chr6 (388-445)||(32045356-32045413)
[»] chr2 (1 HSPs)
chr2 (313-412)||(44657314-44657413)
[»] chr3 (2 HSPs)
chr3 (317-415)||(40851918-40852016)
chr3 (191-243)||(40851583-40851635)
[»] chr7 (2 HSPs)
chr7 (459-506)||(27950168-27950215)
chr7 (457-501)||(28000439-28000483)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 201 - 607
Target Start/End: Original strand, 48097154 - 48097561
Alignment:
Q  201 gtatagttaagtcatttcgttcataatcaacaaatacaaagtaactgatacattactgaaaatactagagttggggtgatataaggatgtcctagctatt 300  Q
    |||||||||||||||||| ||||||||||||||||||||||||  || ||||||| ||||||||| || | ||| |||||||| ||||| ||||||||||    
T  48097154 gtatagttaagtcatttcattcataatcaacaaatacaaagtagttggtacattattgaaaatacgagggctggagtgatatatggatgccctagctatt 48097253  T
Q  301 attctatgagcaaactatatttgttggcctccgaacatgcaacactacaaagtctgatctatttaataagagatttttacattgtaaaataagatcacca 400  Q
       |||||||||||   |||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  48097254 ---ctatgagcaaaacctatttggtggcctccgaacatgcaacactacaaagtctggtctatttagtaagagatttttacattgtaaaataagatcacca 48097350  T
Q  401 aattcatttagaggaccattggtggtggcaagagcaacatatagaatttcacgattagtttcaaacaaaacaacattcatttagtttgatatgaccactt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48097351 aattcatttagaggaccattggtggtggcaagagcaacatatagaaattcacgattagtttcaaacaaaacaacattcattcagtttgatatgaccactt 48097450  T
Q  501 tgatagct---cccaagtctatggtttcagcttctagaagagtgacaaagaagtagaaatattat-atttgccaagaatgtgcaccctgaagattctcta 596  Q
    ||||||||   | ||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||    
T  48097451 tgatagcttcccgcaaatctatggttttagcttctagaagagtgacaaagaagtagaaatattatgatttgccaagaatgtgcatcccgaagattctcta 48097550  T
Q  597 aagcacatgtt 607  Q
    |||||||||||    
T  48097551 aagcacatgtt 48097561  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 337 - 433
Target Start/End: Complemental strand, 27466822 - 27466726
Alignment:
Q  337 atgcaacactacaaagtctgatctatttaataagagatttttacattgtaaaataagatcaccaaattcatttagaggaccattggtggtggcaaga 433  Q
    |||| ||||||||||||| | | |||| | ||||||| || |||||||  |||||||| ||||||| ||||| |||||| |||||||||||||||||    
T  27466822 atgcgacactacaaagtcgggtttattaagtaagagacttctacattgagaaataagaacaccaaactcattaagaggaacattggtggtggcaaga 27466726  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 48043269 - 48043225
Alignment:
Q  1 tattatacttatttacctaccataaaggttcacaatattcttcaa 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  48043269 tattatacttatttacctaccatacaggttcacaatattcttcaa 48043225  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 457 - 505
Target Start/End: Complemental strand, 5691701 - 5691653
Alignment:
Q  457 agtttcaaacaaaacaacattcatttagtttgatatgaccactttgata 505  Q
    |||||||||||||||||| | ||||  |||||||||| |||||||||||    
T  5691701 agtttcaaacaaaacaacgtacattccgtttgatatggccactttgata 5691653  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 388 - 445
Target Start/End: Original strand, 32045356 - 32045413
Alignment:
Q  388 aataagatcaccaaattcatttagaggaccattggtggtggcaagagcaacatataga 445  Q
    |||||| |||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  32045356 aataaggtcaccaaattcattaagaggaacattggtggtggcaagagcatcatataga 32045413  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 412
Target Start/End: Complemental strand, 44657413 - 44657314
Alignment:
Q  313 aactatatttgttggcctccgaacatgcaacactacaaagtctgatctatttaataagagatttttacattgtaaaataagatcaccaaattcatttaga 412  Q
    ||||||||| |||  ||||| ||||||| | ||||||||||| |||||||| | ||||||| |||||||||| || |  ||||| |||||||||||||||    
T  44657413 aactatattagtttacctccaaacatgcgatactacaaagtcggatctattaagtaagagacttttacattgaaagacgagatctccaaattcatttaga 44657314  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 415
Target Start/End: Original strand, 40851918 - 40852016
Alignment:
Q  317 atatttgttggcctccgaacatgcaacactacaaagtctgatctatttaataagagatttttacattgtaaaataagatcaccaaattcatttagagga 415  Q
    ||||| ||| |||| ||||||||  |||||||| |||| | |||||| ||||||||| || ||||||| || | ||| || ||||||||||||||||||    
T  40851918 atattagtttgcctacgaacatgagacactacatagtcaggtctattaaataagagacttctacattgaaagacaaggtctccaaattcatttagagga 40852016  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 40851583 - 40851635
Alignment:
Q  191 tttagcaaaggtatagttaagtcatttcgttcataatcaacaaatacaaagta 243  Q
    |||||||||||||   || | |||||||||||||||||||| |||||||||||    
T  40851583 tttagcaaaggtaatatttattcatttcgttcataatcaacgaatacaaagta 40851635  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 506
Target Start/End: Original strand, 27950168 - 27950215
Alignment:
Q  459 tttcaaacaaaacaacattcatttagtttgatatgaccactttgatag 506  Q
    |||||||||||||||||| |||||  |||||||||||| |||||||||    
T  27950168 tttcaaacaaaacaacatgcatttcatttgatatgaccgctttgatag 27950215  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 457 - 501
Target Start/End: Original strand, 28000439 - 28000483
Alignment:
Q  457 agtttcaaacaaaacaacattcatttagtttgatatgaccacttt 501  Q
    |||||||||||||||||||| ||||   |||||||||||||||||    
T  28000439 agtttcaaacaaaacaacatgcattccatttgatatgaccacttt 28000483  T

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