View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13020_low_22 (Length: 264)

Name: NF13020_low_22
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13020_low_22
NF13020_low_22
[»] chr1 (8 HSPs)
chr1 (1-261)||(48585776-48586036)
chr1 (1-147)||(48640349-48640495)
chr1 (5-118)||(48661987-48662100)
chr1 (16-115)||(48629302-48629401)
chr1 (5-111)||(48617776-48617882)
chr1 (18-118)||(48667589-48667689)
chr1 (5-111)||(11547684-11547790)
chr1 (21-136)||(48657037-48657152)
[»] chr8 (3 HSPs)
chr8 (1-149)||(25892445-25892594)
chr8 (5-120)||(27224423-27224538)
chr8 (7-120)||(27228628-27228741)
[»] chr3 (1 HSPs)
chr3 (5-118)||(19665125-19665238)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 48585776 - 48586036
Alignment:
Q  1 tgtttttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585776 tgtttttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgc 48585875  T
Q  101 tggaaaagagacaaggagaagcttaatgggatcttcgtatgtcatttttctttttattatttattgagtgattttcttcttcaaagttggagatacctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585876 tggaaaagagacaaggagaagcttaatgggatcttcgtatgtcatttttctttttattatttattgagtgattttcttcttcaaagttggagatacctat 48585975  T
Q  201 agcaagagaatacttgctctcttatattggaagaaagacttcctcttcccttgtgtcacag 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585976 agcaagagaatacttgctctcttatattggaagaaagacttcctcttcccttgtgtcacag 48586036  T

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Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 48640349 - 48640495
Alignment:
Q  1 tgtttttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48640349 tgtttttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgc 48640448  T
Q  101 tggaaaagagacaaggagaagcttaatgggatcttcgtatgtcattt 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  48640449 tggaaaagagacaaggagaagcttaatgggatcttcgtatgtcattt 48640495  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 48661987 - 48662100
Alignment:
Q  5 tttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctgga 104  Q
    |||||||||  |||||||||||||||| || |||| |||||| |||||||||||| |||||||||||| || |||| |||||||||||||||||||||||    
T  48661987 tttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgctgga 48662086  T
Q  105 aaagagacaaggag 118  Q
    ||||| ||||||||    
T  48662087 aaagaaacaaggag 48662100  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 48629302 - 48629401
Alignment:
Q  16 tctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaag 115  Q
    |||||||||| || ||||| |||| ||||||||||||||||||| | |||||||||| || |||| |||||||||||||||||||||||||||| |||||    
T  48629302 tctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaag 48629401  T

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Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 48617882 - 48617776
Alignment:
Q  5 tttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctgga 104  Q
    |||||||||  ||||||||||| ||||||| ||||  |||||||||||||||||| ||||| |||||| || |||| |||||||||||||||||||||||    
T  48617882 tttgccagctttctctgttgtgatgaagatgacagaagcaccctttgcagcaagacactttgctagtctaagaagagggtttatgtgtccttgtgctgga 48617783  T
Q  105 aaagaga 111  Q
     ||||||    
T  48617782 taagaga 48617776  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 48667589 - 48667689
Alignment:
Q  18 tctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaagga 117  Q
    ||||||||| ||||||| ||||  |||||||||||||||||| | || ||||||| || |||| |||||||||||||||||||||||||||| |||||||    
T  48667589 tctgttgtgatgaagatgacagaagcaccctttgcagcaagacatttacctagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaagga 48667688  T
Q  118 g 118  Q
    |    
T  48667689 g 48667689  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 11547684 - 11547790
Alignment:
Q  5 tttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctgga 104  Q
    |||||||||  ||| ||||||| ||||||| ||||  |||||||||||||||||| ||||| ||| || || |||| ||||||||||||||||| |||||    
T  11547684 tttgccagctttctttgttgtgatgaagatgacagaagcaccctttgcagcaagacactttgctaatctaagaagagggtttatgtgtccttgtcctgga 11547783  T
Q  105 aaagaga 111  Q
    |||||||    
T  11547784 aaagaga 11547790  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 48657037 - 48657152
Alignment:
Q  21 gttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaa 120  Q
    |||||||||||||| ||||  | |||||||||||||||| |||| ||||||  || ||||  |||||| ||||| | ||  ||| |||| ||||||||||    
T  48657037 gttgtggtgaagatgacagaagaaccctttgcagcaagacacttccctagtttaagaagagagtttatatgtccgtatgaaggataagatacaaggagaa 48657136  T
Q  121 gcttaatgggatcttc 136  Q
     || ||||||| ||||    
T  48657137 tctgaatgggagcttc 48657152  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 25892594 - 25892445
Alignment:
Q  1 tgtttttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcct-agtccaacaagatggtttatgtgtccttgtg 99  Q
    ||||| |||| || || ||||||||||||||||| | ||  |||||| ||||||||||| | |||||| || |||| ||||||||||| ||||| |||      
T  25892594 tgtttgtgccggctgtttctgttgtggtgaagatgatagatgcaccccttgcagcaagagattttccttagaccaagaagatggtttaggtgtcgttgaa 25892495  T
Q  100 ctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcattttt 149  Q
     |||||||||||||||||| |||||||||||||||| || || |||||||    
T  25892494 atggaaaagagacaaggaggagcttaatgggatctttgtttgccattttt 25892445  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 27224423 - 27224538
Alignment:
Q  5 tttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctgga 104  Q
    |||||||||  ||||||||||| ||||||||||||  | ||||||||  |||||| |||||||||||| ||  | | | |||||||||||||||||||||    
T  27224423 tttgccagctttctctgttgtgatgaagataacagaagaaccctttgatgcaagacactttcctagtctaagcataggatttatgtgtccttgtgctgga 27224522  T
Q  105 aaagagacaaggagaa 120  Q
     | || ||||||||||    
T  27224523 tatgatacaaggagaa 27224538  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 27228628 - 27228741
Alignment:
Q  7 tgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctggaaa 106  Q
    |||||||  |||| |||||| ||||||||||||  | ||||||||  |||||| ||||||||| || ||  | | | ||||||||||||||||||||| |    
T  27228628 tgccagctttctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgctggata 27228727  T
Q  107 agagacaaggagaa 120  Q
     || ||||||||||    
T  27228728 tgatacaaggagaa 27228741  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 19665238 - 19665125
Alignment:
Q  5 tttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctgga 104  Q
    |||||||||  ||||||| ||| ||||||| || |  | |||||||||||||||| ||||| |||||| || |||| |||||||||||||||||||||||    
T  19665238 tttgccagctttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacactttgctagtctaagaagagggtttatgtgtccttgtgctgga 19665139  T
Q  105 aaagagacaaggag 118  Q
     | |||| ||||||    
T  19665138 tatgagataaggag 19665125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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