View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13020_low_23 (Length: 263)
Name: NF13020_low_23
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 37626971 - 37627228
Alignment:
| Q |
1 |
caatttccctgagaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaaga |
100 |
Q |
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| T |
37626971 |
caatttcccttagaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaaga |
37627070 |
T |
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| Q |
101 |
gataggccaacagagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttacaaaaaccatttgcattttgg |
200 |
Q |
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| T |
37627071 |
gatagaccaacagagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttacaaaaaccatttgcattttgg |
37627170 |
T |
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| Q |
201 |
atgttattgatgacatctttgacaattatggtacattagaggatcttgttcttctcac |
258 |
Q |
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| T |
37627171 |
atgttattgatgacatctttgacaattatggtacattagaggatcttgttcttttcac |
37627228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 37618569 - 37618809
Alignment:
| Q |
12 |
agaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaagagataggccaac |
111 |
Q |
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| T |
37618569 |
agaaatgctacatttcataactagtttatttgattt-gtttaggtggtggaaagagttgggacttgttgaaaaacttggttttgcaagagatagaccaac |
37618667 |
T |
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| Q |
112 |
agagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttacaaaaaccatttgcattttggatgttattgat |
211 |
Q |
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| T |
37618668 |
agagtgcttcttatggacagtagggatatttccagaaccatgtcattcaaattgccgcatagaacttacaaaaaccatatgtattttgctagtaatggat |
37618767 |
T |
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| Q |
212 |
gacatctttgacaattatggtacattagaggatcttgttctt |
253 |
Q |
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| T |
37618768 |
gatatctttgacacttatggaacattagatgaacttgttctt |
37618809 |
T |
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