View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13020_low_3 (Length: 589)
Name: NF13020_low_3
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 181 - 572
Target Start/End: Original strand, 39640846 - 39641219
Alignment:
| Q |
181 |
taatatttgatcaaatttttcttatttcctgagcgaactctagatttgtcaatggtatttctcctnnnnnnntcaaagggttaacaccaaaataggagat |
280 |
Q |
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| T |
39640846 |
taatatttgatcaaatttttcttatttcctgagtgaactcaagatttgtcaatggtatttctcctaaaaaa-tcaaagggttaacaccaaaattggagat |
39640944 |
T |
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| Q |
281 |
tgatcataatagtccgtaaacgtggtagatcacttaacacaaatcacgtgtaatgnnnnnnnggcccatgagttgcataaggagtgtagtattttgcatt |
380 |
Q |
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| T |
39640945 |
tgatcataatagtccgtaaacgtggtagatcacttaacacaaatcacgtgtaatgtttttttggcccatgagttgcataaggagtgtagtattttgcatt |
39641044 |
T |
|
| Q |
381 |
gtcaatagagactgttttcaaagaatctcagggaattatagtggttttctcctctcaactaggcattttacatgcacaaaaatcaatatccaaactttga |
480 |
Q |
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| T |
39641045 |
gtcaatagagactgttttcaaagaatctcagggcattatagtggttttctcctctcaactaggcattttacatgcacaaaaatcaatatccaaactttg- |
39641143 |
T |
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| Q |
481 |
actacttgctgatgagaactacttgcttactagactagagccgccgttgctcaagtcgtctagagttggtaaaaacagtgtaacataagaga |
572 |
Q |
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| T |
39641144 |
----------------aactacttgcttactagactagagccgccgttgctcaagtcgtctagagttggtaaaaacagtgtaacataagaga |
39641219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 39640585 - 39640758
Alignment:
| Q |
10 |
gtgagaagaacagctaactatatcgctacatctaaattttgtccaaactaaaaatattaaccaatattccccttgaaaattaaagatcattactgtatta |
109 |
Q |
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| T |
39640585 |
gtgagaagaacagctacctatatcgctacatctaaattttgtccaaactaacaatattaaccaatattccccttgaaaattaaagatcattactgtatta |
39640684 |
T |
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| Q |
110 |
tgaaccagttttgagttgaccataggccgatcccgttaaggtccaaatgccgctaggtaggggttagttgctaa |
183 |
Q |
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| T |
39640685 |
tgaaccagttttgagttgaccataggccgattccgttaaggtccaaatgccgctaggtaggggttagttgctaa |
39640758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 39681291 - 39681227
Alignment:
| Q |
269 |
aaaataggagattgatcataatagtccgtaaacgtggtagatcacttaacacaaatcacgtgtaa |
333 |
Q |
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||||||| || ||||||| |||||||| |||||||||| |||| ||||||||||||| |||||| |
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| T |
39681291 |
aaaatagaagtttgatcaaaatagtccacaaacgtggtaaatcagttaacacaaatcatgtgtaa |
39681227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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