View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13020_low_4 (Length: 564)
Name: NF13020_low_4
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 27 - 529
Target Start/End: Complemental strand, 6135386 - 6134884
Alignment:
| Q |
27 |
gtatacatgaaatcctagcaagttttacgtattcactgcaaaatattctaagtaaacacgaaaatgcagcatctaaaattttcagttgcattattgattt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6135386 |
gtatacatgaaatcctagcaagttttacgcattcactgcaaaatattctaagtaaacatgaaaatgcagcatctaaaattttcagttgcattattgattt |
6135287 |
T |
|
| Q |
127 |
gttgagcattaaattaaataagttatacaaacctaaatgtatgcatattgattcaaggtgaaggctatatcgtgcaatattgtttgtgtgcttgatcttg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
6135286 |
gttgagcattaaattaaataagttatacaaacctaaatgtatgcatattgattcaaggtgaaggctatatcgtgcaatattgttagtgtgtttgatcttg |
6135187 |
T |
|
| Q |
227 |
tacaatttggagtgtcattagggataaaagaagcataagaggtgagatttttcttttggttagcacggatcacaagctcactaatttgaatatgttgagg |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
6135186 |
tacaatttggagtgtcattagggataaaagaagcataagaggtgagatttctcttttggttagcactgatcacaagctcactaatttggatatgttgagg |
6135087 |
T |
|
| Q |
327 |
attgaagcaattcttaacggatgctggattctcaagggtcggtacactgctagaaaagataaaattagtgtcttgggcgtggctcatttatgtttgaagg |
426 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6135086 |
attgaagcaattcttaacgggtgctggattctcgagggtcggtacacttctagaaaagataaaattagtgtcttgggtgtggctcatttatgtttgaagg |
6134987 |
T |
|
| Q |
427 |
aagccatgaatcatcgcatgagttgaaagcaatcacataaattttaacactacattttcaccaaaaatctcaatacattggctatacggagtcccacact |
526 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6134986 |
aagccatgaatcattgcatgagttgaaagcaatcacataaattttaacactacattttcaccaaaaatctcaatacattggctatacggagtcccacact |
6134887 |
T |
|
| Q |
527 |
tga |
529 |
Q |
| |
|
||| |
|
|
| T |
6134886 |
tga |
6134884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 6122141 - 6122081
Alignment:
| Q |
139 |
attaaataagttatacaaacctaaatgtatgcatattgattcaaggtgaaggctatatcgt |
199 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6122141 |
attaaacaagtcatacaaacctaaatgtatgcatattgattcaaggtgaaggctatatcgt |
6122081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 6122062 - 6122021
Alignment:
| Q |
202 |
aatattgtttgtgtgcttgatcttgtacaatttggagtgtca |
243 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6122062 |
aatattgttagtgtgcttgatcttgtacaatttggagtgtca |
6122021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 488 - 529
Target Start/End: Complemental strand, 6122018 - 6121977
Alignment:
| Q |
488 |
caaaaatctcaatacattggctatacggagtcccacacttga |
529 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6122018 |
caaatatctcaatacattggctatatggagtcccacacttga |
6121977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University