View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13020_low_5 (Length: 557)
Name: NF13020_low_5
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 251 - 515
Target Start/End: Complemental strand, 55154413 - 55154161
Alignment:
| Q |
251 |
atccggaacaattttaacgtatgaagcttagaatagcaaaggttgcgttttcacccgacactagttttgttcttttagttaattacaaaaagatggccaa |
350 |
Q |
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| T |
55154413 |
atccggaacaattttaacgtatgaagcttagaatagcaa---------tttcacccgacactagttttgttcttttagttaattacaaaaagatggccaa |
55154323 |
T |
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| Q |
351 |
tcctttcaaaactttatcatattttctttcatgtcattaaaatcaacaaggcaccaagttaatgtagttcatcatcatcagttcaaagaaaacagacgta |
450 |
Q |
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| T |
55154322 |
tcctttcaaaacttaatcatattttctttcatgtcattaaaatcaacaaggcaccaagttaatgtagttcatc---atcagttcaaagaaaacagacgta |
55154226 |
T |
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| Q |
451 |
ttggttgctgagtaatcacatcacagtacaattaaagattgatagtgttcaatatgtatataaat |
515 |
Q |
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| T |
55154225 |
ttggttgctgagtaatcacatcacagtacaattaaagattgatagtattcaataagtatataaat |
55154161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 468
Target Start/End: Complemental strand, 55173940 - 55173790
Alignment:
| Q |
318 |
tgttcttttagttaattacaaaaa--gatggccaatcctttcaaaactttatcatattttct-ttcatgtcattaaaatcaacaaggcaccaagttaatg |
414 |
Q |
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| T |
55173940 |
tgttgttttcgttaattacaaaaaaagatggccaatccttgcaaaagtttcttatactttctgttcatgttagtaaaatcaacagggcaccaagtcaatg |
55173841 |
T |
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| Q |
415 |
tagttcatcatcatcagttcaaagaaaacagacgtattggttgctgagtaatca |
468 |
Q |
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| T |
55173840 |
cag---gtcatccccagttgaaagaaaacaaacatattggttgctgaataatca |
55173790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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