View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13020_low_6 (Length: 548)
Name: NF13020_low_6
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 15 - 530
Target Start/End: Original strand, 13021958 - 13022473
Alignment:
| Q |
15 |
aagtaagagttacaatagagtataaagactagaaaagactaaaccacccttgacccaattacaaccaaaggcccattacatgttgtctaacattcctcac |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13021958 |
aagtaagagttacaatagagtataaagactagaaaagactaaaccacccttgacccaattacaaccaaaggcccattacatgttgtctaacattcctcac |
13022057 |
T |
|
| Q |
115 |
ctcacacgctggttttgtgaggttgagttaggcacatccgctatttctaagacataggtgaagggtaggggcggttgatataggcatttgtttgattctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13022058 |
ctcacacgctggttttgtgaggttgagttaggcacagccgcaatttctaagacataggtgaagggtaggggcggttgatataggcatttgtttgattctt |
13022157 |
T |
|
| Q |
215 |
agaaggattaagtgtggcttaatggcttaaacattcctatgtgtgcaggggttgtacaactaccaaaatttgaaggatttactaggagatggaattttca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13022158 |
agaaggattaagtgtggcttaatggcttaaacattcctatgtgtgcaggggttgtacaactaccaaaatttgaaggatttactaggagatggaattttca |
13022257 |
T |
|
| Q |
315 |
ccgttgatggcgagaaatggcgcgagcaaaggaagatatcaagtcatgaattctccaccaggatgttaagggactttagtagttcaatattcagaaaaaa |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13022258 |
ccgttgatggcgagaaatggcgcgagcaaaggaagatatcaagtcatgaattctccaccaggatgttaagggactttagtacttcaatattcagaaaaaa |
13022357 |
T |
|
| Q |
415 |
tgcagcaaaagttgcaaatatagtgtctgaagcagcaaattctaatactaaattagaaattcaagtgagtaaatacattctttgaaagatactatcatat |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13022358 |
tgcagcaaaagttgcaaatatagtgtctgaagcagcaaattctaatactaaattagaaattcaagtgagtaaatacattctttgaaagatactatcatat |
13022457 |
T |
|
| Q |
515 |
tgaataatgatagaat |
530 |
Q |
| |
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|||||||||||||||| |
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| T |
13022458 |
tgaataatgatagaat |
13022473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 178 - 510
Target Start/End: Complemental strand, 13071878 - 13071547
Alignment:
| Q |
178 |
ggtaggggcggttgatataggcatttgtttgattcttagaaggattaagtgtggcttaatggcttaaacattcctatgtgtgcaggggttgtacaactac |
277 |
Q |
| |
|
|||| ||| |||| |||| |||| |||||| |||| ||||||||| |||| |||||||||||||||| || |||| ||||||| |||||||||||| |
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| T |
13071878 |
ggtaagggtggttcatatcggcaattgtttcattcgtagaaggatgaagtacggcttaatggcttaaattttt-tatgcttgcagggattgtacaactac |
13071780 |
T |
|
| Q |
278 |
caaaatttgaaggatttactaggagatggaattttcaccgttgatggcgagaaatggcgcgagcaaaggaagatatcaagtcatgaattctccaccagga |
377 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| | || |
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|
| T |
13071779 |
caaaatttgaaggatttactaggagatggaattttcgccgttgatggtgagaaatggcgtgaacaaaggaagatatcaagtcatgaattctccacgaaga |
13071680 |
T |
|
| Q |
378 |
tgttaagggactttagtagttcaatattcagaaaaaatgcagcaaaagttgcaaatatagtgtctgaagcagcaaattctaatactaaattagaaattca |
477 |
Q |
| |
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||||| |||| || |||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||| || |
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| T |
13071679 |
tgttacgggatttcagtacttcaatattcagaaagaatgctgcaaaagttgcaaatatagtgtctgaagctgcaacttctaattttaagttagaaatcca |
13071580 |
T |
|
| Q |
478 |
agtgagtaaatacattctttgaaagatactatc |
510 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |
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| T |
13071579 |
agtgagtaaatatattctttgaaagatactatc |
13071547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 18939354 - 18939296
Alignment:
| Q |
108 |
tcctcacctcacacgctggttttgtgaggttgagttaggcacatccgctatttctaaga |
166 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| ||||||| || || | |||||||||| |
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|
| T |
18939354 |
tcctcacctcacaagctgattttgtgaggttgtgttaggcccaaccaccatttctaaga |
18939296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 42846662 - 42846602
Alignment:
| Q |
108 |
tcctcacctcacacgctggttttgtgaggttgagttaggcacatccgctatttctaagaca |
168 |
Q |
| |
|
||||||||||||| || ||||||||| ||||| ||||||| || || | |||||||||||| |
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|
| T |
42846662 |
tcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagaca |
42846602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 39902620 - 39902559
Alignment:
| Q |
108 |
tcctcacctcacacgctggttttgtgaggttgagttaggcacatccgctatttctaagacat |
169 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| ||||||| || || | ||||||||||||| |
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|
| T |
39902620 |
tcctcacctcacaagctggttttgtggggttgtgttaggcccaaccaccatttctaagacat |
39902559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 28073237 - 28073179
Alignment:
| Q |
109 |
cctcacctcacacgctggttttgtgaggttgagttaggcacatccgctatttctaagac |
167 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| ||||||| || || | ||||||||||| |
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|
| T |
28073237 |
cctcacctcacaagctggttttgtggggttgtgttaggcccaaccacaatttctaagac |
28073179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 30727412 - 30727375
Alignment:
| Q |
108 |
tcctcacctcacacgctggttttgtgaggttgagttag |
145 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||| |
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| T |
30727412 |
tcctcacctcacaagccggttttgtgaggttgagttag |
30727375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 23839134 - 23839090
Alignment:
| Q |
108 |
tcctcacctcacacgctggttttgtgaggttgagttaggcacatc |
152 |
Q |
| |
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||||||||||||| || ||||||||||||||| ||||||| |||| |
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| T |
23839134 |
tcctcacctcacaagccggttttgtgaggttgtgttaggcccatc |
23839090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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