View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13020_low_7 (Length: 518)
Name: NF13020_low_7
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 13 - 497
Target Start/End: Original strand, 44573770 - 44574253
Alignment:
| Q |
13 |
catcaaattgagagtgagaaaaggtgaaatagtagatatgtttgtagttggaccaagaggtagatcattgtgaacaggagcccaaatcttgtatccttgg |
112 |
Q |
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| T |
44573770 |
catcaaattgagagtgagaaaaggtgaaatagtagatatgtttgtagttggaccaagaggtagatcattgtgaacaggagcccaaatcttgtatccttgg |
44573869 |
T |
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| Q |
113 |
tagtcaagaaagtatgacaaatctgacattggtggcttatctgaatttcatatcaatttaattcttcacattatagtgtgtgtgcttggaagtcaataaa |
212 |
Q |
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| T |
44573870 |
tagtcaagaaagtatgacaaatctgacattggtggcttatctgaatttcatatcaatttaattat----------gtgtgtgtgcttggaagtcaataaa |
44573959 |
T |
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| Q |
213 |
gtatttatccatttagagattaa---------acttacatcgaagatagaggttgatagcatgggaggggaatccccttccaggagcacctttaagaaga |
303 |
Q |
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| T |
44573960 |
gtatttatccatttagagattaatttatttaaacttacatcgaagatagaggttgatagcatgggagaggaatccccttccagaagcacctttaagaaga |
44574059 |
T |
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| Q |
304 |
gaggtaatgggaatgaagctaaaatcaattgcatctggtttgttaggaaccgtgagcagccattcactatggctgctcatttgagtatcccctcccctct |
403 |
Q |
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| T |
44574060 |
gaggtaatgggaatgaagctaaaatcaattgcatctggtttgttaggaaccgtgagcagccattcactatggctgctcatttgagtatcccctcccctct |
44574159 |
T |
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| Q |
404 |
ttacacatattacatttattccctgaaaattcaatgtttcaaaattattatttgttcttccaagagcaccatttcgaaagaaagtgacagaatg |
497 |
Q |
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| T |
44574160 |
ttacacatattacatttattccctgaaaattcaatgttggaaaattattatttgttcttccaagagcaacatttcgaaagaaagcgacagaatg |
44574253 |
T |
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