View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13020_low_9 (Length: 477)
Name: NF13020_low_9
Description: NF13020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13020_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 22 - 467
Target Start/End: Original strand, 42719322 - 42719768
Alignment:
| Q |
22 |
ctggaagcatattatagcatgtggtttgtgtttgtttattattgcttattgcttattgcttagcactagagtatacgtattttggttgtgtgatatttca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42719322 |
ctggaagcatattatagcatgtggtttgtgtttgtttattattgcttattgcttattgcttagcactagagtatacgtattttggttgtgtgatatttca |
42719421 |
T |
|
| Q |
122 |
agtcaaaagtcaagtctacccacccactcactttacccaccaatgccaaatagcagcacaccatcactgcactgggaacatgccttacctcctcccatgt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42719422 |
agtcaaaagtcaagtctacccacccactcactttacccaccaatgccaaatagcagcacaccatcactgcactgggaacatgccttacctcctcccatgt |
42719521 |
T |
|
| Q |
222 |
ctattatgatgagcccttgtgaaaaatcttcaggcagaatcccaacagtagaaaattgattcctcatttctgatttc-aaatggcctaaattctccattt |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42719522 |
ctattatgatgagcccttgtgaaaaatcttcaggcagaatcccaacagtagaaaattgattcctcatttctgatttcaaaatggcctaaattctccattt |
42719621 |
T |
|
| Q |
321 |
aggcactgtgatgatgtcacctatcttttgtaagtgggtcctacaatacctttctctccataccaccttaccctctgctgcttacttctgctctctttgg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42719622 |
aggcactgtgatgatgtcacctatcttttgtaagtgggtcctacaatacctttctctccataccaccttaccctctgctgcttacttctgctctctttgg |
42719721 |
T |
|
| Q |
421 |
tgcagtctctttgctttccccatcactactcaccgtacctgcctttg |
467 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42719722 |
tgcagtctctttgcttgccccatcactactcaccgtacctgcctttg |
42719768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University