View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13021_high_1 (Length: 840)

Name: NF13021_high_1
Description: NF13021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13021_high_1
NF13021_high_1
[»] chr4 (7 HSPs)
chr4 (15-830)||(28604748-28605564)
chr4 (583-656)||(48257500-48257575)
chr4 (610-665)||(15182798-15182853)
chr4 (607-658)||(27593675-27593726)
chr4 (606-656)||(7008857-7008907)
chr4 (617-659)||(25274085-25274127)
chr4 (606-656)||(36194899-36194949)
[»] chr7 (5 HSPs)
chr7 (583-656)||(34899475-34899550)
chr7 (583-656)||(28044624-28044699)
chr7 (606-664)||(21329034-21329092)
chr7 (606-664)||(42603507-42603565)
chr7 (610-647)||(25255404-25255441)
[»] chr3 (8 HSPs)
chr3 (607-659)||(12116275-12116327)
chr3 (581-658)||(20987621-20987700)
chr3 (606-665)||(2192413-2192472)
chr3 (606-664)||(22485300-22485358)
chr3 (606-664)||(28995045-28995103)
chr3 (617-659)||(46934826-46934868)
chr3 (583-657)||(38859979-38860055)
chr3 (606-659)||(50194200-50194253)
[»] chr2 (4 HSPs)
chr2 (606-658)||(32448483-32448535)
chr2 (583-647)||(33585613-33585679)
chr2 (610-656)||(4904014-4904060)
chr2 (581-656)||(6358750-6358827)
[»] chr8 (5 HSPs)
chr8 (607-659)||(4809151-4809203)
chr8 (606-662)||(14544755-14544811)
chr8 (606-658)||(29939473-29939525)
chr8 (607-658)||(33299041-33299092)
chr8 (606-664)||(14600434-14600492)
[»] chr6 (3 HSPs)
chr6 (607-659)||(23947162-23947214)
chr6 (610-656)||(679284-679330)
chr6 (606-647)||(7976064-7976105)
[»] chr1 (4 HSPs)
chr1 (607-659)||(50271985-50272037)
chr1 (606-664)||(13691499-13691557)
chr1 (606-656)||(36775578-36775628)
chr1 (606-647)||(19061083-19061124)
[»] chr5 (3 HSPs)
chr5 (581-656)||(2979174-2979251)
chr5 (607-664)||(6074472-6074529)
chr5 (617-662)||(15571099-15571144)


Alignment Details
Target: chr4 (Bit Score: 731; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 15 - 830
Target Start/End: Complemental strand, 28605564 - 28604748
Alignment:
Q  15 atcttttacttatgtaagcaacgaataatgattacagtaattgatagaaaaaataaacaggatggaacatgaaacatttcttt-aagttatgcatgaaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28605564 atcttttacttatgtaagcaacgaataatgattacagtaattgatagaaaaaataaacaggatggaacatgaaacatttcttttaagttatgcatgaaac 28605465  T
Q  114 atttctcgagaaacaatcaagaattggtgctcattaaattaacccttctagctatttgcaaccaatgcaaaatacaaagtgcaaatgcttacataattag 213  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28605464 atttcttgagaaacaatcaagaattggtgctcattaaattaacccttctagctatttgcaaccaatgcaaaatacaaagtgcaaatgcttacataattag 28605365  T
Q  214 acaatataacttttttacatggatgaaacatgagggtggcatgcactgagaaaggtatattgcatgaataacactacgagatcatcttctgtacaacgtt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28605364 acaatataacttttttacatggatgaaacatgagggtggcatgcactgagaaaggtatattgcatgaataacactacgagatcatcttctgtacaacgtt 28605265  T
Q  314 aaagatggcttgtgttcgagtttgagaaggagctatggttgctacagaatagcatcctnnnnnnntcaataatcacaccttcctaacttaatcatgtaag 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       |||||||||| ||||||||||||||||||||||||    
T  28605264 aaagatggcttgtgttcgagtttgagaaggagctatggttgctacagagtagcatcctaaaaaaatcaataatcagaccttcctaacttaatcatgtaag 28605165  T
Q  414 acttgctcatgaattgaaatttgtttgacaccgtgctctctgaagaaggatatgaggtcgacatgatgttgttgagacatatattgcctatagagagaat 513  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28605164 actttctcatgaattgaaatttgtttgacaccgtgctctctgaagaaggatatgaggtcgacatgatgttgttgagacatatatagcctatagagagaat 28605065  T
Q  514 caatgttcaattaatgactttagcgtcaaccttgcagatcgaaaggtgtagataatatgaacgctttgattttatcatattatttttatgtattgccgtt 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28605064 caatgttcaattaatgactttagcgtcaaccttgcagatcgaaaggtgtagataatatgaacgctttgattttatcatattatttttatgtattgccgtt 28604965  T
Q  614 gtttgctattaacttagatgttgtgaatttgttcttagattcatccattttannnnnnnaacgatgttgaatatcattttcatttttgtagcaataaaac 713  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||||||    
T  28604964 gtttgctattaacttagatgctgtgaatttgttcttagattcatccattttatttttttaacgatgttgaatatcattttcatttttgtagaaataaaac 28604865  T
Q  714 taatttaaatttgttgtcttaattaaaggataaacctgtaaaagcaatactaatggtcaatgaatttaagatcacaatcaagcttattattcccgttatt 813  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28604864 taatttaaatttgttgtcttaattaaaggataaaccagtaaaagcaatactaatagtcaatgaatttaagatcacaatcaagcttattattcccgttatt 28604765  T
Q  814 tactcaatgatcctatg 830  Q
    |||||||||||||||||    
T  28604764 tactcaatgatcctatg 28604748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 583 - 656
Target Start/End: Complemental strand, 48257575 - 48257500
Alignment:
Q  583 ttttatcatattatttttatgtatt--gccgttgtttgctattaacttagatgttgtgaatttgttcttagattca 656  Q
    |||||||||||||||| || |||||  |||||||| |||||||||||| ||| |||||| |||||||  |||||||    
T  48257575 ttttatcatattatttgtaggtattttgccgttgtatgctattaacttggattttgtgagtttgttcgcagattca 48257500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 665
Target Start/End: Original strand, 15182798 - 15182853
Alignment:
Q  610 cgttgtttgctattaacttagatgttgtgaatttgttcttagattcatccatttta 665  Q
    |||||| |||||||||  |||||||||||| |||||||  ||||||||||||||||    
T  15182798 cgttgtatgctattaatatagatgttgtgagtttgttcgcagattcatccatttta 15182853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 658
Target Start/End: Complemental strand, 27593726 - 27593675
Alignment:
Q  607 tgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatc 658  Q
    ||||||| | |||||||||||| |||||||||| ||||||| ||||||||||    
T  27593726 tgccgttatatgctattaacttggatgttgtgagtttgttcatagattcatc 27593675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 606 - 656
Target Start/End: Complemental strand, 7008907 - 7008857
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttcttagattca 656  Q
    |||||||||| |||||||||||||| |||||||| || |||| ||||||||    
T  7008907 ttgccgttgtatgctattaacttaggtgttgtgagttcgttcgtagattca 7008857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 617 - 659
Target Start/End: Original strand, 25274085 - 25274127
Alignment:
Q  617 tgctattaacttagatgttgtgaatttgttcttagattcatcc 659  Q
    ||||||||||||||||||||||| |||||||  ||||||||||    
T  25274085 tgctattaacttagatgttgtgagtttgttcgcagattcatcc 25274127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 606 - 656
Target Start/End: Original strand, 36194899 - 36194949
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttcttagattca 656  Q
    |||||||||| |||||||||||| |||||||||| |||||||  |||||||    
T  36194899 ttgccgttgtatgctattaacttggatgttgtgagtttgttcgcagattca 36194949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 656
Target Start/End: Complemental strand, 34899550 - 34899475
Alignment:
Q  583 ttttatcatattatttttatgtatt--gccgttgtttgctattaacttagatgttgtgaatttgttcttagattca 656  Q
    |||||||||||||||| |||| |||  |||||||| |||||||||||| |||||||||| |||||||  |||||||    
T  34899550 ttttatcatattatttgtatgcattttgccgttgtatgctattaacttggatgttgtgagtttgttcgcagattca 34899475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 583 - 656
Target Start/End: Complemental strand, 28044699 - 28044624
Alignment:
Q  583 ttttatcatattattttt--atgtattgccgttgtttgctattaacttagatgttgtgaatttgttcttagattca 656  Q
    ||||||||||||||||||  |  | |||||||||| |||||||||||| |||||| ||| ||||||| ||||||||    
T  28044699 ttttatcatattatttttagacattttgccgttgtatgctattaacttggatgttatgagtttgttcgtagattca 28044624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 606 - 664
Target Start/End: Complemental strand, 21329092 - 21329034
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatccatttt 664  Q
    |||||||| | |||||||||| | ||||||||||||||||||  |||||||||| ||||    
T  21329092 ttgccgttttatgctattaacatggatgttgtgaatttgttcacagattcatccttttt 21329034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 606 - 664
Target Start/End: Complemental strand, 42603565 - 42603507
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatccatttt 664  Q
    |||||||| | |||||||||| |||||||||||| |||||||  |||||||||| ||||    
T  42603565 ttgccgttttatgctattaacatagatgttgtgagtttgttcacagattcatccgtttt 42603507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 647
Target Start/End: Original strand, 25255404 - 25255441
Alignment:
Q  610 cgttgtttgctattaacttagatgttgtgaatttgttc 647  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  25255404 cgttgtatgctattaacttagatgttgtgagtttgttc 25255441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 607 - 659
Target Start/End: Original strand, 12116275 - 12116327
Alignment:
Q  607 tgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatcc 659  Q
    ||||||| | |||||||||||| |||||||||| |||||||||||||||||||    
T  12116275 tgccgttatatgctattaacttggatgttgtgagtttgttcttagattcatcc 12116327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 581 - 658
Target Start/End: Complemental strand, 20987700 - 20987621
Alignment:
Q  581 gattttatcatattatttttatgtatt--gccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatc 658  Q
    |||||||||||||||||| || | |||  || ||||| |||||||||||| |||| ||||| ||||||| ||||||||||    
T  20987700 gattttatcatattatttgtaggcattttgcagttgtatgctattaacttggatgatgtgagtttgttcgtagattcatc 20987621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 665
Target Start/End: Original strand, 2192413 - 2192472
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatccatttta 665  Q
    |||||||| | |||||||||| | ||||||||||||||||||  |||||||||| |||||    
T  2192413 ttgccgttttatgctattaacatggatgttgtgaatttgttcacagattcatccttttta 2192472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 606 - 664
Target Start/End: Original strand, 22485300 - 22485358
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatccatttt 664  Q
    |||||||| | |||||| ||| | |||||||||| ||||||| ||||||||||||||||    
T  22485300 ttgccgttttatgctatgaacatggatgttgtgagtttgttcatagattcatccatttt 22485358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 606 - 664
Target Start/End: Complemental strand, 28995103 - 28995045
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatccatttt 664  Q
    |||||||| | |||||||||| | |||||||||| ||||||| ||||||||||| ||||    
T  28995103 ttgccgttttatgctattaacatggatgttgtgagtttgttcatagattcatccttttt 28995045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 617 - 659
Target Start/End: Original strand, 46934826 - 46934868
Alignment:
Q  617 tgctattaacttagatgttgtgaatttgttcttagattcatcc 659  Q
    |||||||||||| |||||||||| ||||||| |||||||||||    
T  46934826 tgctattaacttggatgttgtgagtttgttcgtagattcatcc 46934868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 657
Target Start/End: Complemental strand, 38860055 - 38859979
Alignment:
Q  583 ttttatcatattatttttatgtatt--gccgttgtttgctattaacttagatgttgtgaatttgttcttagattcat 657  Q
    |||||||||||||||| || | |||  |||||||| |||||||||||| | |||||||| |||||||  ||||||||    
T  38860055 ttttatcatattatttgtaggcattttgccgttgtatgctattaacttgggtgttgtgagtttgttcgcagattcat 38859979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 659
Target Start/End: Complemental strand, 50194253 - 50194200
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatcc 659  Q
    |||||||| | |||||||||||| |||||||||| |||||||  ||||||||||    
T  50194253 ttgccgttatatgctattaacttggatgttgtgagtttgttcgcagattcatcc 50194200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 606 - 658
Target Start/End: Complemental strand, 32448535 - 32448483
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatc 658  Q
    |||||||||| |||||||||||| |||||||||| ||||||| ||||||||||    
T  32448535 ttgccgttgtatgctattaacttggatgttgtgagtttgttcatagattcatc 32448483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 647
Target Start/End: Complemental strand, 33585679 - 33585613
Alignment:
Q  583 ttttatcatattatttttatgtatt--gccgttgtttgctattaacttagatgttgtgaatttgttc 647  Q
    |||||||||||||||| |||| |||  |||||||| |||||||||||| | |||||||| |||||||    
T  33585679 ttttatcatattatttgtatgcattttgccgttgtatgctattaacttgggtgttgtgagtttgttc 33585613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 610 - 656
Target Start/End: Complemental strand, 4904060 - 4904014
Alignment:
Q  610 cgttgtttgctattaacttagatgttgtgaatttgttcttagattca 656  Q
    |||||| |||||||||||| |||||||||| ||||||| ||||||||    
T  4904060 cgttgtatgctattaacttggatgttgtgagtttgttcgtagattca 4904014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 581 - 656
Target Start/End: Complemental strand, 6358827 - 6358750
Alignment:
Q  581 gattttatcatattatttttatgtatt--gccgttgtttgctattaacttagatgttgtgaatttgttcttagattca 656  Q
    |||||||||||||||||| || |||||  | |||||| |||||||||||| | |||||||| ||| ||| ||||||||    
T  6358827 gattttatcatattatttgtacgtattttgtcgttgtatgctattaacttgggtgttgtgagttttttcgtagattca 6358750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 607 - 659
Target Start/End: Original strand, 4809151 - 4809203
Alignment:
Q  607 tgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatcc 659  Q
    ||||||| | ||||||||||||||||||||||| |||||||  ||||||||||    
T  4809151 tgccgttatatgctattaacttagatgttgtgagtttgttcgcagattcatcc 4809203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 606 - 662
Target Start/End: Complemental strand, 14544811 - 14544755
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatccatt 662  Q
    ||||||||||||||||||||||| |||| ||||| ||||||   |||||||||||||    
T  14544811 ttgccgttgtttgctattaacttggatggtgtgagtttgtttgcagattcatccatt 14544755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 606 - 658
Target Start/End: Original strand, 29939473 - 29939525
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatc 658  Q
    |||||||||| || |||||||||||||||||||| || |||| ||||||||||    
T  29939473 ttgccgttgtatgatattaacttagatgttgtgacttcgttcgtagattcatc 29939525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 658
Target Start/End: Original strand, 33299041 - 33299092
Alignment:
Q  607 tgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatc 658  Q
    ||||||| | ||||||||||||||||||||||| |||||||  |||||||||    
T  33299041 tgccgttatatgctattaacttagatgttgtgagtttgttcgcagattcatc 33299092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 606 - 664
Target Start/End: Complemental strand, 14600492 - 14600434
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatccatttt 664  Q
    |||||||| | |||||||||| | |||||||||| ||||||| ||||||||||| ||||    
T  14600492 ttgccgttttatgctattaacatggatgttgtgagtttgttcatagattcatccttttt 14600434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 607 - 659
Target Start/End: Complemental strand, 23947214 - 23947162
Alignment:
Q  607 tgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatcc 659  Q
    ||||||| | |||||||||||| |||||||||| ||||||| |||||||||||    
T  23947214 tgccgttatatgctattaacttggatgttgtgagtttgttcgtagattcatcc 23947162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 610 - 656
Target Start/End: Original strand, 679284 - 679330
Alignment:
Q  610 cgttgtttgctattaacttagatgttgtgaatttgttcttagattca 656  Q
    |||||| |||||||||||||| |||||||| ||||||| ||||||||    
T  679284 cgttgtatgctattaacttaggtgttgtgagtttgttcgtagattca 679330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 647
Target Start/End: Complemental strand, 7976105 - 7976064
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttc 647  Q
    |||||||||| |||||||||||||| |||||||| |||||||    
T  7976105 ttgccgttgtatgctattaacttaggtgttgtgagtttgttc 7976064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 607 - 659
Target Start/End: Complemental strand, 50272037 - 50271985
Alignment:
Q  607 tgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatcc 659  Q
    ||||||| | ||||||||||||||||||||||| |||||||  ||||||||||    
T  50272037 tgccgttatatgctattaacttagatgttgtgagtttgttcgcagattcatcc 50271985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 606 - 664
Target Start/End: Complemental strand, 13691557 - 13691499
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatccatttt 664  Q
    |||||||| | |||||||||| | |||||||||| ||||||| ||||||||||| ||||    
T  13691557 ttgccgttttatgctattaacatggatgttgtgagtttgttcatagattcatccttttt 13691499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 606 - 656
Target Start/End: Complemental strand, 36775628 - 36775578
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttcttagattca 656  Q
    |||||||||| |||||||||||| |||||||||| |||||||  |||||||    
T  36775628 ttgccgttgtatgctattaacttggatgttgtgagtttgttcgcagattca 36775578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 647
Target Start/End: Original strand, 19061083 - 19061124
Alignment:
Q  606 ttgccgttgtttgctattaacttagatgttgtgaatttgttc 647  Q
    |||||||||| |||||||||||| |||||||||| |||||||    
T  19061083 ttgccgttgtatgctattaacttggatgttgtgagtttgttc 19061124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 581 - 656
Target Start/End: Complemental strand, 2979251 - 2979174
Alignment:
Q  581 gattttatcatattatttttatgtattg--ccgttgtttgctattaacttagatgttgtgaatttgttcttagattca 656  Q
    ||||| |||||||||||| || | ||||  ||||||| |||||||||||| |||||||||| |||||||  |||||||    
T  2979251 gatttcatcatattatttgtaggcattgtgccgttgtatgctattaacttggatgttgtgagtttgttcgcagattca 2979174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 664
Target Start/End: Complemental strand, 6074529 - 6074472
Alignment:
Q  607 tgccgttgtttgctattaacttagatgttgtgaatttgttcttagattcatccatttt 664  Q
    ||||||| | |||||||||| | |||||||||| ||||||| ||||||||||| ||||    
T  6074529 tgccgttttgtgctattaacatggatgttgtgagtttgttcatagattcatccttttt 6074472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 662
Target Start/End: Original strand, 15571099 - 15571144
Alignment:
Q  617 tgctattaacttagatgttgtgaatttgttcttagattcatccatt 662  Q
    |||||||||||| |||||||||| |||||||  |||||||||||||    
T  15571099 tgctattaacttggatgttgtgagtttgttcgcagattcatccatt 15571144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University