View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13021_high_26 (Length: 202)
Name: NF13021_high_26
Description: NF13021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13021_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 44264039 - 44264212
Alignment:
| Q |
11 |
ggagcagagaacttgaataacagctctcacaggcaaccgttcgttttgagctgcatgaagtgaggcttctggtgtgagtttcctgctatcaatcaaccta |
110 |
Q |
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| T |
44264039 |
ggagaagagaacttgaataacagctctcacaggcaaccgttcgttttgagctgcatgaagtgaggcttctggtgtgagtttcctgctatcaatcaaccta |
44264138 |
T |
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| Q |
111 |
cacagactttttctttcttgcttcgacacgcttggatgtgcctgttacaaaaataaataagcagacagtgtcac |
184 |
Q |
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| T |
44264139 |
cacagactttttctttcttgcttcgacacgcttggatgtgcctgttacaaaaataaataagcagacagtgtcac |
44264212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 56165786 - 56165946
Alignment:
| Q |
16 |
agagaacttgaataacagctctcac---aggcaaccgttcgttttgagctgcatgaagtgaggcttctggtgtgagtttcctgctatcaatcaacctaca |
112 |
Q |
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| T |
56165786 |
agagaaattgaataacagctctcactgcaggcaaccgttcgttttgagctgcatgaagtgaggcttctggtgtgagtttcctgctatcaatcaac----- |
56165880 |
T |
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| Q |
113 |
cagactttttctttcttgcttcgacacgcttggatgtgcctgttacaaaaataaataagcagacagtgtcac |
184 |
Q |
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| T |
56165881 |
------tttcctttcttgctttgacatacttggatgtgcctataacaaaaatatataagtagacagtctcac |
56165946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 2837359 - 2837248
Alignment:
| Q |
48 |
cgttcgttttgagctgcatgaagtgaggcttctggtgtgagtttcctgctatcaatcaacctacacagactttttctttcttgcttcgacacgcttggat |
147 |
Q |
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| T |
2837359 |
cgttcgttttgtgctgcatgaagtgatgcttcttgtgttagtttcctgcaatctattagtctgcatagacccttcctttcttgctttgatacacttggat |
2837260 |
T |
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| Q |
148 |
gtgcctgttaca |
159 |
Q |
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|||||||||||| |
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| T |
2837259 |
gtgcctgttaca |
2837248 |
T |
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