View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13021_high_7 (Length: 424)
Name: NF13021_high_7
Description: NF13021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13021_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 409
Target Start/End: Complemental strand, 2366007 - 2365608
Alignment:
| Q |
10 |
caataatatagccaacaagccattagctcagtggcacccaatcttgcttttgagtgcttttagaaagactaaccagaattgaaactatctgcaagggccc |
109 |
Q |
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| T |
2366007 |
caataatatagccaacaagccattagctcagtggcacccaatcttgcttttgagtgcttttagaaagactaaccagaattgaaactatctgcaagggccc |
2365908 |
T |
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| Q |
110 |
aggatatgattctaccaactgcttcaaacaaattgtggcatttgcaaacaagaaatatctgcaaataaggcaatccaaacagaccctaaataaagttgag |
209 |
Q |
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| T |
2365907 |
aggatatgattctaccaactgcttcaaacaaattgtggcatttgcaaacaagaaatatctgcaaataaggcaatccaaatagaccctaaataaagttgag |
2365808 |
T |
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| Q |
210 |
ggctttcatatacatacatcgaacatccacacacattcaaataaaaagatagtaataccaaatgaaaatgttcattgcaaacatccaattgaaacttagt |
309 |
Q |
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| T |
2365807 |
ggctttcatatacatacatcgaacatccacacacattcaaataaaaagatagtaataccaaatgaaaatgttcattgcaaacatccaattgaaacttagt |
2365708 |
T |
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| Q |
310 |
atgttgctaataacaattagcatacattattattatcaagataaaattagcatacattattcatctaaaaattcagcattgatgatcatgctcaaagttg |
409 |
Q |
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| T |
2365707 |
atgttgctaataacaattagcatacattattattatcaagataaaattagcatacattattcatctaataattcagcattgatgatcatgctcaaagttg |
2365608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 2353846 - 2353692
Alignment:
| Q |
19 |
agccaacaagccattagctcagtggcacccaatcttgcttttgagtgcttttagaaagactaaccagaattgaaactatctgcaagggcccaggatatga |
118 |
Q |
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| T |
2353846 |
agccaacaagccattaggacagtgacaccgaatttctctttttagtgcttttagaaatactcaccaaaattgaaactaactgcaagggtccaggatatga |
2353747 |
T |
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| Q |
119 |
ttctaccaactgcttcaaacaaattgtggcatttgcaaacaagaaatatctgcaa |
173 |
Q |
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| T |
2353746 |
ttctaccaactgcttgaaagaaattggggcatttgcaaacaagaaatgtctgcaa |
2353692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 2361773 - 2361621
Alignment:
| Q |
19 |
agccaacaagccattagctcagtggcacccaatcttgcttttgagtgcttttagaaagactaaccagaattgaaactatctgcaagggcccaggatatga |
118 |
Q |
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| T |
2361773 |
agccaataagcaattaggtcagtggcacccaaattctcttt--agtgcttttagaaagactcaccgaaatcgaaactaactgcaagggaccaggatatga |
2361676 |
T |
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| Q |
119 |
ttctaccaactgcttcaaacaaattgtggcatttgcaaacaagaaatatctgcaa |
173 |
Q |
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| T |
2361675 |
ttctaccaactgcttgaaagaaatcgagacatttgcaaacaagaaatgtctgcaa |
2361621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 2369246 - 2369193
Alignment:
| Q |
173 |
aataaggcaatccaaacagaccctaaataaagttgagggctttcatatacataca |
227 |
Q |
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| T |
2369246 |
aataagacaatccaaacagacc-taaataaagttaagggctttcatatacataca |
2369193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 2369130 - 2369072
Alignment:
| Q |
354 |
aattagcatacat---tattcatctaaaaattcagcattgatgatcatgctcaaagttg |
409 |
Q |
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| T |
2369130 |
aattagcatacattattattaatctaaaaatttagcatccatgatcatgctcaaagttg |
2369072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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