View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13021_low_10 (Length: 386)
Name: NF13021_low_10
Description: NF13021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13021_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 91 - 367
Target Start/End: Complemental strand, 31704873 - 31704597
Alignment:
| Q |
91 |
tatttgtgaatgatcgtgtaggtcaaaagacaaacttatacatgtgttgtgtgaatcttatgaagtttatgtataggatatttttgtctcctattctgaa |
190 |
Q |
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| T |
31704873 |
tatttgtgaatgatcgtgtaggtcaaaagacaaacttatacatgtgttgtgtgaatcttatgaagtttatgtataagatatttttgtctcctattctgaa |
31704774 |
T |
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| Q |
191 |
ttacatggaaattttgtgtgcgtataaatgtttgatgtttgctacagatgttgccagaaggtcctattagccacagcaagatagagtttcttgaggatgg |
290 |
Q |
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| T |
31704773 |
ttacatggaaaatttgtgtacgtataaatgtttgatgtttgctgcagatgttgccagaaggtcctattagccacagcaagatagagtttcttgaggatgg |
31704674 |
T |
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| Q |
291 |
tcagtgtaaggcaatttgggagctgaaaggtgagactcttgtttacaccggccttgttcgcactacaaatgaggtcg |
367 |
Q |
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| T |
31704673 |
tcagtgtaaggcaatttgagagctgaaaggtgagactctggtttacaccggccttgttcgcactacaaatgaggtcg |
31704597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 31705010 - 31704915
Alignment:
| Q |
1 |
taaagtaatttgtcaaatgaatttgaaaagctttgaggtaagaccaattattactactaaattttaaagataatgaacgagttatgtgtttatttg |
96 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31705010 |
taaagtaatttgtcaagtgaatttgaaaagctttgaggtaagaccaattattactactaaattttaaagataatgaacgagttatgtgtttgtttg |
31704915 |
T |
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