View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13021_low_14 (Length: 302)

Name: NF13021_low_14
Description: NF13021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13021_low_14
NF13021_low_14
[»] chr8 (5 HSPs)
chr8 (22-298)||(5032697-5032971)
chr8 (22-89)||(42200652-42200719)
chr8 (24-70)||(8687872-8687918)
chr8 (22-76)||(29546897-29546951)
chr8 (22-58)||(17521289-17521325)
[»] chr3 (8 HSPs)
chr3 (29-89)||(1456530-1456590)
chr3 (25-89)||(26983380-26983444)
chr3 (22-89)||(38387976-38388043)
chr3 (22-89)||(55066590-55066657)
chr3 (22-76)||(10922311-10922365)
chr3 (24-78)||(35126270-35126324)
chr3 (24-76)||(1111844-1111896)
chr3 (22-78)||(17588366-17588422)
[»] chr2 (6 HSPs)
chr2 (23-88)||(30089054-30089119)
chr2 (23-88)||(30125658-30125723)
chr2 (22-68)||(1238166-1238212)
chr2 (22-88)||(15427696-15427762)
chr2 (23-89)||(24592836-24592902)
chr2 (41-82)||(32861915-32861956)
[»] chr1 (7 HSPs)
chr1 (23-76)||(2884451-2884504)
chr1 (22-89)||(16033440-16033507)
chr1 (22-89)||(30382500-30382567)
chr1 (22-89)||(34766864-34766931)
chr1 (24-89)||(37185655-37185720)
chr1 (22-78)||(32007598-32007654)
chr1 (41-89)||(34632192-34632240)
[»] chr5 (5 HSPs)
chr5 (22-73)||(781867-781918)
chr5 (22-89)||(6489011-6489078)
chr5 (22-72)||(11310458-11310508)
chr5 (24-81)||(40445989-40446046)
chr5 (25-85)||(3389169-3389229)
[»] chr4 (3 HSPs)
chr4 (22-89)||(12698601-12698667)
chr4 (22-72)||(18635534-18635584)
chr4 (24-76)||(7248342-7248394)
[»] scaffold0016 (1 HSPs)
scaffold0016 (22-76)||(99041-99095)
[»] scaffold0008 (1 HSPs)
scaffold0008 (22-55)||(119573-119606)
[»] chr7 (10 HSPs)
chr7 (40-89)||(6556155-6556204)
chr7 (28-89)||(16537526-16537587)
chr7 (28-89)||(16577850-16577911)
chr7 (28-89)||(16587751-16587812)
chr7 (28-89)||(16628075-16628136)
chr7 (22-51)||(43753191-43753220)
chr7 (22-86)||(1079685-1079749)
chr7 (40-84)||(39919259-39919303)
chr7 (22-74)||(42753432-42753484)
chr7 (24-76)||(43680993-43681045)
[»] chr6 (3 HSPs)
chr6 (28-89)||(14049874-14049935)
chr6 (23-88)||(33824886-33824951)
chr6 (28-76)||(14918303-14918351)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 298
Target Start/End: Complemental strand, 5032971 - 5032697
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccacnnnnnnnnngaaataaacgcaaatacttttat 121  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || ||||||| | ||||||||||         |||||||||||||||||||||||    
T  5032971 gcttaactcagttggttgggacaatgtataatatatacatgatccggagttcaaaccccggccaccacaaaaaaat-gaaataaacgcaaatacttttat 5032873  T
Q  122 acataaaattgaaggtctttcatgtcttaagctgtgatactattctcttaccttaacttctaaatttttgtaacnnnnnnnnnttaacaatactcatagc 221  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||    
T  5032872 acataaaattgaaggtctttcatgccttaagctgtcatactattctcttaccttaacttctaaatttttgtaacaaaaaaaa-ttaacaatactcatagc 5032774  T
Q  222 tttatatgcacctttaccctaattcaaacacaaaagcctagattttatagttgtgtgtgcaaatttaaatgatatac 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5032773 tttatatgcacctttaccctaattcaaacacaaaagcctagattttatagttgtgtgtgcaaatttaaatgatatac 5032697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 42200719 - 42200652
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    ||||| |||||||||| ||||||||||||||||||| |||| |||| |||||||| || || ||||||    
T  42200719 gcttagctcagttgatagggacaatgtataatatatgcatggtctgaggttcaaaccttggtcaccac 42200652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 8687872 - 8687918
Alignment:
Q  24 ttaactcagttgattgggacaatgtataatatatacatgatctgggg 70  Q
    |||||||| ||| | |||||||||||||||||||||| |||||||||    
T  8687872 ttaactcaattggtagggacaatgtataatatatacaagatctgggg 8687918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 29546897 - 29546951
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaa 76  Q
    |||||||||||||||| ||||||||  ||||||||| || | |||||||||||||    
T  29546897 gcttaactcagttgatagggacaatagataatatatgcaaggtctggggttcaaa 29546951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 17521325 - 17521289
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatata 58  Q
    ||||||||||||||||  |||||||||||||||||||    
T  17521325 gcttaactcagttgataaggacaatgtataatatata 17521289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 1456590 - 1456530
Alignment:
Q  29 tcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    ||||||||| ||||||||||||||||||| || | |||| |||||||| ||||||||||||    
T  1456590 tcagttgatagggacaatgtataatatatgcaaggtctgaggttcaaaactcggccaccac 1456530  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 26983380 - 26983444
Alignment:
Q  25 taactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    |||||||||||||| ||||||||||||||||||  | | |||||| ||| ||||||| |||||||    
T  26983380 taactcagttgattaggacaatgtataatatatgtaaggtctgggattcgaatctcgaccaccac 26983444  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 38387976 - 38388043
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    ||||| |||||||||| | ||||||| ||||||||| || |||||| || ||||||||||| ||||||    
T  38387976 gcttagctcagttgatagtgacaatgcataatatatgcaagatctgaggctcaaatctcggtcaccac 38388043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 55066657 - 55066590
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    ||||| |||||||| |  ||| |||| ||||||||| |||| ||||||||||||||| ||||||||||    
T  55066657 gcttagctcagttggtacggataatgcataatatatgcatggtctggggttcaaatcccggccaccac 55066590  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 10922365 - 10922311
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaa 76  Q
    |||||||||||||| | ||||||||| ||||||||| || |||| ||||||||||    
T  10922365 gcttaactcagttggtagggacaatgcataatatatgcaagatccggggttcaaa 10922311  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 35126324 - 35126270
Alignment:
Q  24 ttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatc 78  Q
    |||||||||||| | |||| |||| ||||||||| || |||||||||||||||||    
T  35126324 ttaactcagttggtagggataatgcataatatatgcaagatctggggttcaaatc 35126270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 1111896 - 1111844
Alignment:
Q  24 ttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaa 76  Q
    |||||||||||||| ||||||||  ||||||||| || | |||||||||||||    
T  1111896 ttaactcagttgatagggacaatacataatatatgcaaggtctggggttcaaa 1111844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 17588366 - 17588422
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatc 78  Q
    |||||||||||||| |  |||||||| ||||||||| || |||||||||||| ||||    
T  17588366 gcttaactcagttggtaaggacaatgcataatatatgcaagatctggggttcgaatc 17588422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 30089054 - 30089119
Alignment:
Q  23 cttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccacca 88  Q
    |||| |||||||| | ||||||||| |||||||||||| | || |||||||||| |||||||||||    
T  30089054 cttagctcagttggtagggacaatgcataatatatacaaggtccggggttcaaacctcggccacca 30089119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 30125658 - 30125723
Alignment:
Q  23 cttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccacca 88  Q
    |||| |||||||| | ||||||||| |||||||||||| | || |||||||||| |||||||||||    
T  30125658 cttagctcagttggtagggacaatgcataatatatacaaggtccggggttcaaacctcggccacca 30125723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 1238166 - 1238212
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctgg 68  Q
    |||||||||| ||||| ||||||||| |||||||||||| |||||||    
T  1238166 gcttaactcaattgatagggacaatgcataatatatacaagatctgg 1238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 15427696 - 15427762
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccacca 88  Q
    ||||| ||||||||||  ||||||| |||||||||| || | ||| |||||||||||| ||||||||    
T  15427696 gcttagctcagttgatatggacaatatataatatatgcaaggtctagggttcaaatcttggccacca 15427762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 24592902 - 24592836
Alignment:
Q  23 cttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    |||| |||||||| | ||||||||| ||||||||| || | ||||||||||||| | ||||||||||    
T  24592902 cttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaaccccggccaccac 24592836  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 32861915 - 32861956
Alignment:
Q  41 gacaatgtataatatatacatgatctggggttcaaatctcgg 82  Q
    |||||||||||||||||||| ||||| |||||| ||||||||    
T  32861915 gacaatgtataatatatacaagatctagggttcgaatctcgg 32861956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 2884504 - 2884451
Alignment:
Q  23 cttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaa 76  Q
    |||||||||||||||  |||||||| |||||||||||| |||| ||||||||||    
T  2884504 cttaactcagttgatatggacaatgcataatatatacaagatcgggggttcaaa 2884451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 16033507 - 16033440
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    |||| ||||||||||| ||||||||| ||||||||| || | |||||||||||||   ||||||||||    
T  16033507 gcttgactcagttgatagggacaatgcataatatatgcaaggtctggggttcaaactccggccaccac 16033440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 30382500 - 30382567
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    |||||||||||||| || |||||||| |||| |||| || | ||||| ||||||| ||||||||||||    
T  30382500 gcttaactcagttggtttggacaatgcataaaatatgcaaggtctggcgttcaaacctcggccaccac 30382567  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 34766864 - 34766931
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    |||||||||||||| |  ||||||||||||||| || || | |||||||||| || ||||||||||||    
T  34766864 gcttaactcagttggtatggacaatgtataatacatgcaaggtctggggttcgaacctcggccaccac 34766931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 37185720 - 37185655
Alignment:
Q  24 ttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    |||||||||||||| ||||||||| || | |||| |||  ||| || |||||||||||||||||||    
T  37185720 ttaactcagttgatagggacaatgcatcaaatatgcattgtctaggattcaaatctcggccaccac 37185655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 32007654 - 32007598
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatc 78  Q
    |||||||||||||  ||||||||||| |||| ||||||| | || ||||||||||||    
T  32007654 gcttaactcagttcgttgggacaatgcataaaatatacaaggtccggggttcaaatc 32007598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 34632192 - 34632240
Alignment:
Q  41 gacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    ||||||||||||||||| || |||| | |||||||||| ||||||||||    
T  34632192 gacaatgtataatatatgcaagatccgaggttcaaatcccggccaccac 34632240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 781867 - 781918
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttc 73  Q
    |||||||||||||||| |||||||||||||| |||| || | ||||||||||    
T  781867 gcttaactcagttgatagggacaatgtataaaatatgcaaggtctggggttc 781918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 6489011 - 6489078
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    ||||| |||||||| | ||||||||| ||||||||| || | ||||||||||||| | ||||||||||    
T  6489011 gcttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaaccccggccaccac 6489078  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 11310508 - 11310458
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggtt 72  Q
    ||||| |||||||| || |||||||||||||||||| || |||||||||||    
T  11310508 gcttagctcagttggtttggacaatgtataatatatgcaagatctggggtt 11310458  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 40445989 - 40446046
Alignment:
Q  24 ttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcg 81  Q
    ||||||||||||||  |||||||| ||||||||| || | |||| |||||||||||||    
T  40445989 ttaactcagttgataaggacaatgcataatatatgcaaggtctgaggttcaaatctcg 40446046  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 3389169 - 3389229
Alignment:
Q  25 taactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggcca 85  Q
    ||||||||||| |  |||||||| ||||||||| || |||||||||||||||  |||||||    
T  3389169 taactcagttggtatggacaatgcataatatatgcaagatctggggttcaaacatcggcca 3389229  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 12698601 - 12698667
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    ||||| ||||||||||| |||||||| ||||||||| || | |||||||||| ||||| |||||||||    
T  12698601 gcttagctcagttgatttggacaatgcataatatatgcaaggtctggggttcgaatct-ggccaccac 12698667  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 18635534 - 18635584
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggtt 72  Q
    ||||||||||||||||  |||||||| |||||||||||| | |||||||||    
T  18635534 gcttaactcagttgataaggacaatgcataatatatacaaggtctggggtt 18635584  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 7248342 - 7248394
Alignment:
Q  24 ttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaa 76  Q
    |||||||||||||||||||||||| |||| |||| || | ||| |||||||||    
T  7248342 ttaactcagttgattgggacaatgcataaaatatgcaaggtctagggttcaaa 7248394  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 99041 - 99095
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaa 76  Q
    |||| ||||||||||| ||||||||| ||||||||| || | |||||||||||||    
T  99041 gcttgactcagttgatagggacaatgcataatatatgcaaggtctggggttcaaa 99095  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 119573 - 119606
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatat 55  Q
    |||||||||||||||| |||||||||||||||||    
T  119573 gcttaactcagttgatagggacaatgtataatat 119606  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 6556155 - 6556204
Alignment:
Q  40 ggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    ||||||||||||||||||  | ||||||| ||||||| ||||||||||||    
T  6556155 ggacaatgtataatatatgtaagatctggtgttcaaacctcggccaccac 6556204  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 16537587 - 16537526
Alignment:
Q  28 ctcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    |||||||| | |||| |||| |||||||||||| | ||||||||||||| ||||| ||||||    
T  16537587 ctcagttggtagggataatgcataatatatacaaggtctggggttcaaacctcggtcaccac 16537526  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 16577911 - 16577850
Alignment:
Q  28 ctcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    |||||||| | ||||||||  ||||||||| || | ||||||||||||| ||||||||||||    
T  16577911 ctcagttggtagggacaatacataatatatgcaaggtctggggttcaaacctcggccaccac 16577850  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 16587751 - 16587812
Alignment:
Q  28 ctcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    |||||||| | ||||||||  ||||||||| || | ||||||||||||| ||||||||||||    
T  16587751 ctcagttggtagggacaatacataatatatgcaaggtctggggttcaaacctcggccaccac 16587812  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 16628075 - 16628136
Alignment:
Q  28 ctcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    |||||||| | |||| |||| |||||||||||| | ||||||||||||| ||||| ||||||    
T  16628075 ctcagttggtagggataatgcataatatatacaaggtctggggttcaaacctcggtcaccac 16628136  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 43753220 - 43753191
Alignment:
Q  22 gcttaactcagttgattgggacaatgtata 51  Q
    ||||||||||||||||||||||||||||||    
T  43753220 gcttaactcagttgattgggacaatgtata 43753191  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 1079749 - 1079685
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccac 86  Q
    |||||||||||||  |||| |||||| |||| |||| || | || ||||||||||||||||||||    
T  1079749 gcttaactcagttagttggaacaatgcataaaatatgcaaggtccggggttcaaatctcggccac 1079685  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 39919259 - 39919303
Alignment:
Q  40 ggacaatgtataatatatacatgatctggggttcaaatctcggcc 84  Q
    |||||||| ||||||||| || | |||||||||||||||||||||    
T  39919259 ggacaatgaataatatatgcaaggtctggggttcaaatctcggcc 39919303  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 42753484 - 42753432
Alignment:
Q  22 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttca 74  Q
    |||||||||| ||| | |||||||||||||||||||||| | |||| ||||||    
T  42753484 gcttaactcaattggtagggacaatgtataatatatacaaggtctgaggttca 42753432  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 43681045 - 43680993
Alignment:
Q  24 ttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaa 76  Q
    |||||||||||||||||||||||| |||| |||| || | ||| |||||||||    
T  43681045 ttaactcagttgattgggacaatgcataaaatatgcaaggtctagggttcaaa 43680993  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 14049935 - 14049874
Alignment:
Q  28 ctcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 89  Q
    |||||||||||| ||||||| ||||||||| || | |||| |||||||||  ||||||||||    
T  14049935 ctcagttgattgagacaatgcataatatatgcaaggtctgaggttcaaattccggccaccac 14049874  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 33824886 - 33824951
Alignment:
Q  23 cttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccacca 88  Q
    |||| ||||||||||  |||||||| ||||||||| || | || |||||||||| |||||||||||    
T  33824886 cttagctcagttgataaggacaatgcataatatatgcaaggtccggggttcaaacctcggccacca 33824951  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 14918351 - 14918303
Alignment:
Q  28 ctcagttgattgggacaatgtataatatatacatgatctggggttcaaa 76  Q
    |||||||| | ||||||||| |||||||||||| | |||||||||||||    
T  14918351 ctcagttggtagggacaatgcataatatatacaaggtctggggttcaaa 14918303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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