View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13021_low_16 (Length: 290)

Name: NF13021_low_16
Description: NF13021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13021_low_16
NF13021_low_16
[»] scaffold0004 (1 HSPs)
scaffold0004 (10-290)||(92907-93186)
[»] chr6 (5 HSPs)
chr6 (252-290)||(4878027-4878065)
chr6 (257-290)||(7723200-7723233)
chr6 (257-290)||(17327591-17327624)
chr6 (257-290)||(17841530-17841563)
chr6 (257-285)||(24807134-24807162)
[»] chr4 (8 HSPs)
chr4 (256-290)||(4383451-4383485)
chr4 (256-290)||(17425347-17425381)
chr4 (257-290)||(715546-715579)
chr4 (257-290)||(752872-752905)
chr4 (257-290)||(3064869-3064902)
chr4 (257-290)||(5775305-5775338)
chr4 (257-290)||(23292927-23292960)
chr4 (258-290)||(22440559-22440591)
[»] scaffold0793 (1 HSPs)
scaffold0793 (257-290)||(4822-4855)
[»] scaffold0475 (1 HSPs)
scaffold0475 (257-290)||(3393-3426)
[»] scaffold0027 (1 HSPs)
scaffold0027 (257-290)||(46742-46775)
[»] chr8 (4 HSPs)
chr8 (257-290)||(11833935-11833968)
chr8 (257-290)||(25566915-25566948)
chr8 (257-290)||(31514939-31514972)
chr8 (257-290)||(36450695-36450728)
[»] chr7 (5 HSPs)
chr7 (257-290)||(5409772-5409805)
chr7 (257-290)||(29763130-29763163)
chr7 (257-290)||(30813882-30813915)
chr7 (257-290)||(35862036-35862069)
chr7 (257-289)||(23128604-23128636)
[»] chr5 (9 HSPs)
chr5 (257-290)||(10298635-10298668)
chr5 (257-290)||(14873607-14873640)
chr5 (257-290)||(17123132-17123165)
chr5 (257-290)||(21576686-21576719)
chr5 (257-290)||(22423765-22423798)
chr5 (257-290)||(35017128-35017161)
chr5 (257-290)||(39698637-39698670)
chr5 (258-290)||(21190998-21191030)
chr5 (258-290)||(43001890-43001922)
[»] chr3 (7 HSPs)
chr3 (257-290)||(4990913-4990946)
chr3 (257-290)||(8789489-8789522)
chr3 (257-290)||(8842414-8842447)
chr3 (257-290)||(11252061-11252094)
chr3 (257-290)||(20503550-20503583)
chr3 (257-290)||(34185053-34185086)
chr3 (257-290)||(55401160-55401193)
[»] chr2 (4 HSPs)
chr2 (257-290)||(26769607-26769640)
chr2 (257-290)||(37419839-37419872)
chr2 (258-290)||(2438661-2438693)
chr2 (257-285)||(44770144-44770172)
[»] chr1 (10 HSPs)
chr1 (257-290)||(21365993-21366026)
chr1 (257-290)||(22515828-22515861)
chr1 (257-290)||(22947815-22947848)
chr1 (257-290)||(35702543-35702576)
chr1 (257-290)||(37598916-37598949)
chr1 (257-290)||(47989593-47989626)
chr1 (258-290)||(1486646-1486678)
chr1 (257-289)||(2288126-2288158)
chr1 (258-290)||(16297223-16297255)
chr1 (258-290)||(42359391-42359423)


Alignment Details
Target: scaffold0004 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 93186 - 92907
Alignment:
Q  10 catcatcacatacataatctaagccagaaaaatggcaccgtaatgaaattatatgtcacacaaaatgcggaccacaaaaactactatcaacaatgatttc 109  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  93186 catcatcacatacacaatctaagccagaaaaatggcaccgtaatgaaattatatgtcacataaaatgcagaccacaaaaactactatcaacaatgatttc 93087  T
Q  110 taccaataaatataataaatttactaattaactgcgaataactctagcacaatgtagacagggttttatcagacaccaatctcatacacattcaagaata 209  Q
    ||  |||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93086 taaaaataaatataataa-tttactaattaactgtgaataactctagtacaatgtagacagggttttatcagacaccaatctcatacacattcaagaata 92988  T
Q  210 agtaaattcaaggttagcatcttaaaatgtatgcgctatactatacatatgaagcactgacactcctcggattaggcgtgt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  92987 agtaaattcaaggttagcatcttaaaatgtatgcgctatactatacatatgaagcacggacactcctcggattaggcgtgt 92907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 4878065 - 4878027
Alignment:
Q  252 atacatatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  4878065 atacctatgaagcacggacactcctcggattaggcgtgt 4878027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 7723200 - 7723233
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  7723200 tatgaagcacggacactcctcggattaggcgtgt 7723233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 17327591 - 17327624
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  17327591 tatgaagcacggacactcctcggattaggcgtgt 17327624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 17841530 - 17841563
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgt 17841563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 24807162 - 24807134
Alignment:
Q  257 tatgaagcactgacactcctcggattagg 285  Q
    |||||||||||||||||||||||||||||    
T  24807162 tatgaagcactgacactcctcggattagg 24807134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Complemental strand, 4383485 - 4383451
Alignment:
Q  256 atatgaagcactgacactcctcggattaggcgtgt 290  Q
    ||||||||||| |||||||||||||||||||||||    
T  4383485 atatgaagcacggacactcctcggattaggcgtgt 4383451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 17425347 - 17425381
Alignment:
Q  256 atatgaagcactgacactcctcggattaggcgtgt 290  Q
    ||||||||||| |||||||||||||||||||||||    
T  17425347 atatgaagcacagacactcctcggattaggcgtgt 17425381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 715546 - 715579
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  715546 tatgaagcacggacactcctcggattaggcgtgt 715579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 752872 - 752905
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  752872 tatgaagcacggacactcctcggattaggcgtgt 752905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 3064869 - 3064902
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  3064869 tatgaagcacggacactcctcggattaggcgtgt 3064902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 5775305 - 5775338
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  5775305 tatgaagcacggacactcctcggattaggcgtgt 5775338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 23292927 - 23292960
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  23292927 tatgaagcacggacactcctcggattaggcgtgt 23292960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 22440559 - 22440591
Alignment:
Q  258 atgaagcactgacactcctcggattaggcgtgt 290  Q
    ||||||||| |||||||||||||||||||||||    
T  22440559 atgaagcacggacactcctcggattaggcgtgt 22440591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 4822 - 4855
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  4822 tatgaagcacggacactcctcggattaggcgtgt 4855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 3426 - 3393
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  3426 tatgaagcacggacactcctcggattaggcgtgt 3393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 46775 - 46742
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  46775 tatgaagcacggacactcctcggattaggcgtgt 46742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 11833968 - 11833935
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  11833968 tatgaagcacagacactcctcggattaggcgtgt 11833935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 25566948 - 25566915
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  25566948 tatgaagcacagacactcctcggattaggcgtgt 25566915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 31514972 - 31514939
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  31514972 tatgaagcacggacactcctcggattaggcgtgt 31514939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 36450695 - 36450728
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  36450695 tatgaagcacagacactcctcggattaggcgtgt 36450728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 5409772 - 5409805
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  5409772 tatgaagcacggacactcctcggattaggcgtgt 5409805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 29763130 - 29763163
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  29763130 tatgaagcacggacactcctcggattaggcgtgt 29763163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 30813915 - 30813882
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  30813915 tatgaagcacggacactcctcggattaggcgtgt 30813882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 35862069 - 35862036
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  35862069 tatgaagcacggacactcctcggattaggcgtgt 35862036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 23128604 - 23128636
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtg 289  Q
    |||||||||| ||||||||||||||||||||||    
T  23128604 tatgaagcacagacactcctcggattaggcgtg 23128636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 10298668 - 10298635
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  10298668 tatgaagcacggacactcctcggattaggcgtgt 10298635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 14873640 - 14873607
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  14873640 tatgaagcacggacactcctcggattaggcgtgt 14873607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 17123165 - 17123132
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  17123165 tatgaagcacggacactcctcggattaggcgtgt 17123132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 21576686 - 21576719
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  21576686 tatgaagcacggacactcctcggattaggcgtgt 21576719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 22423765 - 22423798
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  22423765 tatgaagcacggacactcctcggattaggcgtgt 22423798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 35017161 - 35017128
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  35017161 tatgaagcacggacactcctcggattaggcgtgt 35017128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 39698670 - 39698637
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  39698670 tatgaagcacggacactcctcggattaggcgtgt 39698637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 21190998 - 21191030
Alignment:
Q  258 atgaagcactgacactcctcggattaggcgtgt 290  Q
    ||||||||| |||||||||||||||||||||||    
T  21190998 atgaagcacggacactcctcggattaggcgtgt 21191030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 43001922 - 43001890
Alignment:
Q  258 atgaagcactgacactcctcggattaggcgtgt 290  Q
    ||||||||| |||||||||||||||||||||||    
T  43001922 atgaagcacggacactcctcggattaggcgtgt 43001890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 4990913 - 4990946
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  4990913 tatgaagcacggacactcctcggattaggcgtgt 4990946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 8789489 - 8789522
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  8789489 tatgaagcacggacactcctcggattaggcgtgt 8789522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 8842447 - 8842414
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  8842447 tatgaagcacggacactcctcggattaggcgtgt 8842414  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 11252094 - 11252061
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  11252094 tatgaagcacagacactcctcggattaggcgtgt 11252061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 20503583 - 20503550
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  20503583 tatgaagcacggacactcctcggattaggcgtgt 20503550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 34185053 - 34185086
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  34185053 tatgaagcacggacactcctcggattaggcgtgt 34185086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 55401193 - 55401160
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  55401193 tatgaagcacggacactcctcggattaggcgtgt 55401160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 26769640 - 26769607
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  26769640 tatgaagcacggacactcctcggattaggcgtgt 26769607  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 37419872 - 37419839
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  37419872 tatgaagcacggacactcctcggattaggcgtgt 37419839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 2438661 - 2438693
Alignment:
Q  258 atgaagcactgacactcctcggattaggcgtgt 290  Q
    ||||||||| |||||||||||||||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgt 2438693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 44770144 - 44770172
Alignment:
Q  257 tatgaagcactgacactcctcggattagg 285  Q
    |||||||||||||||||||||||||||||    
T  44770144 tatgaagcactgacactcctcggattagg 44770172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 21365993 - 21366026
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  21365993 tatgaagcacggacactcctcggattaggcgtgt 21366026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 22515828 - 22515861
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  22515828 tatgaagcacggacactcctcggattaggcgtgt 22515861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 22947848 - 22947815
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  22947848 tatgaagcacggacactcctcggattaggcgtgt 22947815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 35702543 - 35702576
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  35702543 tatgaagcacggacactcctcggattaggcgtgt 35702576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 37598949 - 37598916
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  37598949 tatgaagcacggacactcctcggattaggcgtgt 37598916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 47989626 - 47989593
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtgt 290  Q
    |||||||||| |||||||||||||||||||||||    
T  47989626 tatgaagcacggacactcctcggattaggcgtgt 47989593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 1486646 - 1486678
Alignment:
Q  258 atgaagcactgacactcctcggattaggcgtgt 290  Q
    ||||||||| |||||||||||||||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgt 1486678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 2288126 - 2288158
Alignment:
Q  257 tatgaagcactgacactcctcggattaggcgtg 289  Q
    ||||||||||||||| |||||||||||||||||    
T  2288126 tatgaagcactgacattcctcggattaggcgtg 2288158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 16297223 - 16297255
Alignment:
Q  258 atgaagcactgacactcctcggattaggcgtgt 290  Q
    ||||||||| |||||||||||||||||||||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgt 16297255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 42359391 - 42359423
Alignment:
Q  258 atgaagcactgacactcctcggattaggcgtgt 290  Q
    ||||||||| |||||||||||||||||||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgt 42359423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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