View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13021_low_2 (Length: 593)
Name: NF13021_low_2
Description: NF13021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13021_low_2 |
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| [»] scaffold0050 (2 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 46885 - 46549
Alignment:
| Q |
13 |
aatatggtttacttggttttaaattttcatgatagtgttgcaaattattatatcattttctacctcactaaatcgagactccaacttacaagttagcaaa |
112 |
Q |
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| T |
46885 |
aatatggtttacttggtttttaattttcatgatagtgttgcaaattattatatcattttctacctcactaaatcgggactccaactcacaagttagtaaa |
46786 |
T |
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| Q |
113 |
aaggaagagaattctaaagcttttattttatgggagagattgaaaaccgatattgtgcatttagaacttggaggataaataataacttaggattgggata |
212 |
Q |
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| T |
46785 |
aaggaagagaattctaaagcttttattttatggaagagattgaaaactgatattgtgcatttagaacttggaggata---aaaaacttaggattgggata |
46689 |
T |
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| Q |
213 |
aagtatcgtgaaatcaatagttgaaatgaacgaacactggcaacaannnnnnnnnnngaggatgaatgtaattaaa-actatgaatctttcattattatt |
311 |
Q |
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| T |
46688 |
aagtatcatgaaatcaatagttgaaatgaatgaacactagcaacaa--attttttccgaagatgaatgtaattaaagatcgtggatctttcattattatt |
46591 |
T |
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| Q |
312 |
gaccattgactatatgcggaagaatctagtttggttgttagg |
353 |
Q |
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| T |
46590 |
aaccatcgactatatgcagaagaatttagttttgttgttagg |
46549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 380 - 520
Target Start/End: Complemental strand, 45364 - 45224
Alignment:
| Q |
380 |
atagtgacagaatttcaagatcgggaacatgtccacctaaaattcctaatccaacagagctaaactttttcaactttccaccaatacatgcaactatctc |
479 |
Q |
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| T |
45364 |
atagtgatagaatttcaagattgggaacatatccagctaaaattcctaatccagcagagctaaactttttccactttccatcaatacatgcgactatctc |
45265 |
T |
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| Q |
480 |
aacagaatcatcatacatgagctgagattgagttgttatat |
520 |
Q |
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| T |
45264 |
aacagaatcatcatacatgagctgagattgagttgttatat |
45224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 380 - 537
Target Start/End: Complemental strand, 41922995 - 41922810
Alignment:
| Q |
380 |
atagtgacagaatttcaagatcgggaacatgtccacctaaaattcctaatccaacagagctaa----------act-----------ttttcaactttcc |
458 |
Q |
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| T |
41922995 |
atagtgacagaatttcaagattgggaacatgtccagctaaaatccctaatccagcagagctaacccaagtaccactcagattcagacttttcaactttcc |
41922896 |
T |
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| Q |
459 |
accaatacatgcaactatctcaacagaat-------catcatacatgagctgagattgagttgttatattactttcaatttactta |
537 |
Q |
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| T |
41922895 |
accaatacatgcaaccatctcaactgaatcatcatccatcatacatgagctgagattgagatgttctattactttcagtttactta |
41922810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 34452730 - 34452682
Alignment:
| Q |
296 |
atctttcattattattgaccattgactatatgcggaagaatctagtttg |
344 |
Q |
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| T |
34452730 |
atcttttattatttttgaccattgactatatgggaaagaatttagtttg |
34452682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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