View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13021_low_24 (Length: 230)

Name: NF13021_low_24
Description: NF13021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13021_low_24
NF13021_low_24
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-212)||(92614-92819)
[»] chr3 (7 HSPs)
chr3 (1-52)||(40993383-40993434)
chr3 (1-50)||(40052295-40052344)
chr3 (9-49)||(20503429-20503469)
chr3 (1-51)||(22774117-22774168)
chr3 (17-50)||(26492274-26492307)
chr3 (3-51)||(1438766-1438814)
chr3 (18-50)||(14979138-14979170)
[»] chr7 (3 HSPs)
chr7 (2-49)||(25791616-25791664)
chr7 (19-50)||(11700768-11700799)
chr7 (1-50)||(11072260-11072310)
[»] chr1 (7 HSPs)
chr1 (3-50)||(29163430-29163477)
chr1 (1-49)||(46348430-46348479)
chr1 (20-51)||(17778513-17778544)
chr1 (16-50)||(14359589-14359623)
chr1 (1-45)||(18556503-18556548)
chr1 (17-50)||(48450656-48450689)
chr1 (9-49)||(6427425-6427465)
[»] chr8 (5 HSPs)
chr8 (1-47)||(13844643-13844689)
chr8 (9-50)||(36450809-36450851)
chr8 (10-50)||(14134661-14134702)
chr8 (17-49)||(20873027-20873059)
chr8 (1-52)||(31109565-31109617)
[»] chr6 (3 HSPs)
chr6 (1-50)||(10842494-10842544)
chr6 (1-50)||(17841636-17841686)
chr6 (17-50)||(10770743-10770776)
[»] chr2 (5 HSPs)
chr2 (1-50)||(37558939-37558989)
chr2 (21-52)||(24009263-24009294)
chr2 (17-52)||(30404919-30404954)
chr2 (10-52)||(37419702-37419746)
chr2 (20-52)||(36409699-36409731)
[»] chr5 (5 HSPs)
chr5 (1-50)||(14674231-14674281)
chr5 (1-34)||(2436901-2436934)
chr5 (17-50)||(39758243-39758276)
chr5 (1-41)||(11685911-11685951)
chr5 (1-52)||(43001760-43001812)
[»] scaffold0279 (1 HSPs)
scaffold0279 (17-50)||(17735-17768)
[»] chr4 (3 HSPs)
chr4 (17-49)||(12797406-12797438)
chr4 (1-48)||(30298910-30298958)
chr4 (1-48)||(30327778-30327826)


Alignment Details
Target: scaffold0004 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 92819 - 92614
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgtcgtgtccgtatccgtgcttcatagatgcatatagtttgcatgtctttgttgataaacaaaagagatgacatgtt 100  Q
    |||||||||||||||||||||      |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  92819 tattagcggtgtcggcgtgtc-----agtgtccgtatccgtgcttcatagatgcatata-tttgcatgtctttgttggtaaacaaaagagatgacatgtt 92726  T
Q  101 aaaacgttttatcatccaccacattgcaattattcgatttggaattctcatccaccaccctactttatgagtacagatacataagttgatttgcaaacca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  92725 aaaacgttttatcatccaccacattgcaattattcgatttggaattctcatcgaccaccctactttatgagtacagatagataagttgatttgcaaacca 92626  T
Q  201 ctaccgagatat 212  Q
    ||||||||||||    
T  92625 ctaccgagatat 92614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40993383 - 40993434
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgtcgtgtccgtatccgtgcttcatagat 52  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  40993383 tattagcggtgtcgaggtgtccgtgtcgtgtccgtatccgtgcttcatagat 40993434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 40052344 - 40052295
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgtcgtgtccgtatccgtgcttcatag 50  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  40052344 tattagctgtgtcggcgtgtcagtgtcgtgtccgtatccgtgcttcatag 40052295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 20503469 - 20503429
Alignment:
Q  9 gtgtcggcgtgtccgtgtcgtgtccgtatccgtgcttcata 49  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  20503469 gtgtcggcgtgtcagtgtcgtgtccgtatccgtgcttcata 20503429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 22774117 - 22774168
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgtc-gtgtccgtatccgtgcttcataga 51  Q
    |||||| ||||||| |||||| ||||| ||||||||||||||||||||||||    
T  22774117 tattagtggtgtcgacgtgtctgtgtctgtgtccgtatccgtgcttcataga 22774168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 26492274 - 26492307
Alignment:
Q  17 gtgtccgtgtcgtgtccgtatccgtgcttcatag 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  26492274 gtgtccgtgtcgtgtccgtattcgtgcttcatag 26492307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 1438814 - 1438766
Alignment:
Q  3 ttagcggtgtcggcgtgtccgtgtcgtgtccgtatccgtgcttcataga 51  Q
    |||||| |||||| ||||| ||||||||||| ||| |||||||||||||    
T  1438814 ttagcgatgtcggtgtgtcagtgtcgtgtccatattcgtgcttcataga 1438766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 14979170 - 14979138
Alignment:
Q  18 tgtccgtgtcgtgtccgtatccgtgcttcatag 50  Q
    ||||| |||||||||||||||||||||||||||    
T  14979170 tgtccttgtcgtgtccgtatccgtgcttcatag 14979138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 25791664 - 25791616
Alignment:
Q  2 attagcggtgtcggcgtgtccgtgtc-gtgtccgtatccgtgcttcata 49  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  25791664 attagcggtgtcggcgtgtcagtgtctgtgtccgtatccgtgcttcata 25791616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 11700799 - 11700768
Alignment:
Q  19 gtccgtgtcgtgtccgtatccgtgcttcatag 50  Q
    ||||||||||||||||||||||||||||||||    
T  11700799 gtccgtgtcgtgtccgtatccgtgcttcatag 11700768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11072310 - 11072260
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgt-cgtgtccgtatccgtgcttcatag 50  Q
    ||||| ||||||||||||||| |||| ||||||||||||| ||||||||||    
T  11072310 tattatcggtgtcggcgtgtctgtgttcgtgtccgtatccatgcttcatag 11072260  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 29163430 - 29163477
Alignment:
Q  3 ttagcggtgtcggcgtgtccgtgtcgtgtccgtatccgtgcttcatag 50  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  29163430 ttagcggtgtcggcgtgtctgtgttgtgtccatatccgtgcttcatag 29163477  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46348430 - 46348479
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgtc-gtgtccgtatccgtgcttcata 49  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||||||||||    
T  46348430 tattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcata 46348479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 17778544 - 17778513
Alignment:
Q  20 tccgtgtcgtgtccgtatccgtgcttcataga 51  Q
    ||||||||||||||||||||||||||||||||    
T  17778544 tccgtgtcgtgtccgtatccgtgcttcataga 17778513  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 14359589 - 14359623
Alignment:
Q  16 cgtgtccgtgtcgtgtccgtatccgtgcttcatag 50  Q
    |||||| ||||||||||||||||||||||||||||    
T  14359589 cgtgtctgtgtcgtgtccgtatccgtgcttcatag 14359623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18556503 - 18556548
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgt-cgtgtccgtatccgtgctt 45  Q
    ||||||| ||||||||||||| |||| |||||||||||||||||||    
T  18556503 tattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgctt 18556548  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 48450656 - 48450689
Alignment:
Q  17 gtgtccgtgtcgtgtccgtatccgtgcttcatag 50  Q
    ||||||||||||||||||||||| ||||||||||    
T  48450656 gtgtccgtgtcgtgtccgtatccatgcttcatag 48450689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 6427465 - 6427425
Alignment:
Q  9 gtgtcggcgtgtccgtgtcgtgtccgtatccgtgcttcata 49  Q
    |||||||| |||| ||||||||||||||||| |||||||||    
T  6427465 gtgtcggcatgtcagtgtcgtgtccgtatccatgcttcata 6427425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13844643 - 13844689
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgtcgtgtccgtatccgtgcttca 47  Q
    ||||||| |||||||||||||||||||||||| |||| |||||||||    
T  13844643 tattagcagtgtcggcgtgtccgtgtcgtgtctgtattcgtgcttca 13844689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 36450809 - 36450851
Alignment:
Q  9 gtgtcggcgtgtccgtgtc-gtgtccgtatccgtgcttcatag 50  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  36450809 gtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcatag 36450851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 14134702 - 14134661
Alignment:
Q  10 tgtcggcgtgtccgtgtcg-tgtccgtatccgtgcttcatag 50  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  14134702 tgtcgacgtgtccgtgtcggtgtccgtatccgtgcttcatag 14134661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 20873059 - 20873027
Alignment:
Q  17 gtgtccgtgtcgtgtccgtatccgtgcttcata 49  Q
    ||||||||||||||||||||| |||||||||||    
T  20873059 gtgtccgtgtcgtgtccgtattcgtgcttcata 20873027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31109565 - 31109617
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgt-cgtgtccgtatccgtgcttcatagat 52  Q
    ||||| ||||||||||||||| |||| ||||||| |||| |||||||||||||    
T  31109565 tattaacggtgtcggcgtgtcagtgtccgtgtccatatcagtgcttcatagat 31109617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10842544 - 10842494
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgtc-gtgtccgtatccgtgcttcatag 50  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||||||    
T  10842544 tattagcggtgtcggcgtgtccgtgtcaatgtccgtgtccgtgcttcatag 10842494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 17841636 - 17841686
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgtc-gtgtccgtatccgtgcttcatag 50  Q
    ||||||| ||||||||||||| ||||| ||||||||||| |||||||||||    
T  17841636 tattagctgtgtcggcgtgtcagtgtccgtgtccgtatcagtgcttcatag 17841686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 10770743 - 10770776
Alignment:
Q  17 gtgtccgtgtcgtgtccgtatccgtgcttcatag 50  Q
    |||||| |||||||||||||||||||||||||||    
T  10770743 gtgtccatgtcgtgtccgtatccgtgcttcatag 10770776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37558989 - 37558939
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgtc-gtgtccgtatccgtgcttcatag 50  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||||||||||    
T  37558989 tattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcatag 37558939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 52
Target Start/End: Complemental strand, 24009294 - 24009263
Alignment:
Q  21 ccgtgtcgtgtccgtatccgtgcttcatagat 52  Q
    ||||||||||||||||||||||||||||||||    
T  24009294 ccgtgtcgtgtccgtatccgtgcttcatagat 24009263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 30404919 - 30404954
Alignment:
Q  17 gtgtccgtgtcgtgtccgtatccgtgcttcatagat 52  Q
    ||||||||||| ||||||||||||||||||||||||    
T  30404919 gtgtccgtgtcatgtccgtatccgtgcttcatagat 30404954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 37419746 - 37419702
Alignment:
Q  10 tgtcggcgtgtccgtgtc--gtgtccgtatccgtgcttcatagat 52  Q
    |||||||||||| |||||  |||||||||||||||||||||||||    
T  37419746 tgtcggcgtgtcagtgtccggtgtccgtatccgtgcttcatagat 37419702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 36409699 - 36409731
Alignment:
Q  20 tccgtgtcgtgtccgtatccgtgcttcatagat 52  Q
    ||||||||||||| |||||||||||||||||||    
T  36409699 tccgtgtcgtgtctgtatccgtgcttcatagat 36409731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14674281 - 14674231
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgtc-gtgtccgtatccgtgcttcatag 50  Q
    ||||||| ||||||||||||| ||||| ||||| |||||||||||||||||    
T  14674281 tattagctgtgtcggcgtgtcagtgtccgtgtctgtatccgtgcttcatag 14674231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2436934 - 2436901
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgtcgtgtccg 34  Q
    ||||||||||||||||||||| ||||||||||||    
T  2436934 tattagcggtgtcggcgtgtcagtgtcgtgtccg 2436901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 39758276 - 39758243
Alignment:
Q  17 gtgtccgtgtcgtgtccgtatccgtgcttcatag 50  Q
    |||||||||||||||||||||||||| |||||||    
T  39758276 gtgtccgtgtcgtgtccgtatccgtgtttcatag 39758243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11685951 - 11685911
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgtcgtgtccgtatccgt 41  Q
    |||||||||||||||| |||| ||||||||||||| |||||    
T  11685951 tattagcggtgtcggcatgtcagtgtcgtgtccgtgtccgt 11685911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43001812 - 43001760
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgtc-gtgtccgtatccgtgcttcatagat 52  Q
    ||||||| |||||| | |||| ||||| |||||||||||||||||||||||||    
T  43001812 tattagcagtgtcgacatgtcagtgtccgtgtccgtatccgtgcttcatagat 43001760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 17768 - 17735
Alignment:
Q  17 gtgtccgtgtcgtgtccgtatccgtgcttcatag 50  Q
    |||||||||||||||||||||| |||||||||||    
T  17768 gtgtccgtgtcgtgtccgtatctgtgcttcatag 17735  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 12797406 - 12797438
Alignment:
Q  17 gtgtccgtgtcgtgtccgtatccgtgcttcata 49  Q
    ||||||||||||| |||||||||||||||||||    
T  12797406 gtgtccgtgtcgtatccgtatccgtgcttcata 12797438  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30298958 - 30298910
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgt-cgtgtccgtatccgtgcttcat 48  Q
    ||||||| ||||||||||||| |||| |||||||||||| |||||||||    
T  30298958 tattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgcttcat 30298910  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30327826 - 30327778
Alignment:
Q  1 tattagcggtgtcggcgtgtccgtgt-cgtgtccgtatccgtgcttcat 48  Q
    ||||||| ||||||||||||| |||| |||||||||||| |||||||||    
T  30327826 tattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgcttcat 30327778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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